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NC_055728.1__YP_010092357.1__KNT72_gp209__00206

Bact-Vir

Identity

Accession:: NC_055728 ↗
Kingdom:: phage

Quality

87.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Winklervirus› Serratia_phage_X20

TaxID: 2006942

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-85

PDB

Domain cluster: rep: MW057858.1__QPB12453.1__X__00203__D2-80

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF11243.14 best	DUF3045	85.1	4.10e-24	100.0%	87.5%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1uzxA00	3.10.110.10	Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme	0.55	41.0	3.54e-01	81.9%	76.4%
1ii2B01	3.40.449.10	Alpha Beta › 3-Layer(aba) Sandwich › Phosphoenolpyruvate Carboxykinase; domain 1 › Phosphoenolpyruvate Carboxykinase, domain 1	0.53	48.0	3.73e-01	100.0%	92.7%
3f6gA02	3.30.160.340	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain ›	0.52	37.0	4.10e-01	94.0%	96.8%
1ylhA01	3.40.449.10	Alpha Beta › 3-Layer(aba) Sandwich › Phosphoenolpyruvate Carboxykinase; domain 1 › Phosphoenolpyruvate Carboxykinase, domain 1	0.52	48.0	3.56e-01	100.0%	85.4%
1j3bB01	3.40.449.10	Alpha Beta › 3-Layer(aba) Sandwich › Phosphoenolpyruvate Carboxykinase; domain 1 › Phosphoenolpyruvate Carboxykinase, domain 1	0.52	48.0	3.60e-01	100.0%	87.8%
3jzmA02	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.52	39.0	2.80e-01	80.7%	94.4%
2gqqA02	3.30.70.920	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain	0.51	38.0	3.85e-01	80.7%	87.1%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3957641	252.2.1.0 ↗	a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like	0.60	39.0	4.54e-01	95.2%	100.0%
3224634	5001.1.1.41 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw	0.54	37.0	2.45e-01	71.1%	80.3%
3184929	2004.11.1.1 ↗	a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_ATP	0.53	49.0	3.58e-01	100.0%	86.0%
4799073	309.1.1.4 ↗	a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C	0.53	29.0	2.80e-01	77.1%	44.9%
3598736	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.52	39.0	3.38e-01	80.7%	87.4%
3600050	2004.11.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain	0.52	47.0	3.50e-01	97.6%	94.4%
2330703	2004.1.1.42 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE	0.52	36.0	2.42e-01	72.3%	42.6%
4240253	331.2.1.1 ↗	a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV	0.50	40.0	4.31e-01	100.0%	95.9%
4035993	2008.1.1.172 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF26318	0.50	42.0	3.29e-01	100.0%	51.2%
5032419	2008.1.1.0 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like	0.50	37.0	2.91e-01	80.7%	56.1%