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NC_055733.1__YP_010092803.1__KNT77_gp051__00051

Bact-Vir

NC_055733.1__YP_010092803.1__KNT77_gp051__00051

Identity

Accession:
NC_055733 ↗
Kingdom:
phage

Quality

72.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 73-151
PDB
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.66 41.0 3.92e-01 88.6% 54.4%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.65 47.0 4.35e-01 75.9% 73.5%
7a6pB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 49.0 4.11e-01 82.3% 83.3%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 42.0 4.34e-01 88.6% 74.7%
1a1xA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.61 52.0 4.74e-01 92.4% 87.7%
1vqzA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.61 48.0 3.47e-01 87.3% 74.8%
3licA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 46.0 4.45e-01 79.7% 97.7%
4gj4D00 3.30.450.260 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem NO binding associated domain 0.61 45.0 3.98e-01 79.7% 88.0%
2p04A00 3.30.450.260 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem NO binding associated domain 0.60 45.0 4.05e-01 78.5% 87.9%
1jsgA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.60 50.0 4.51e-01 91.1% 85.6%
1h6qA00 2.170.150.10 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A 0.60 50.0 4.03e-01 94.9% 94.0%
4hh3A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 45.0 3.97e-01 78.5% 91.2%
8adbA01 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.60 47.0 3.52e-01 86.1% 81.6%
1jeyB02 2.40.290.10 Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › 0.60 50.0 3.67e-01 89.9% 92.0%
1q2lA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.60 47.0 3.42e-01 86.1% 68.4%
4exoA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 45.0 3.69e-01 81.0% 67.8%
8hbfB02 3.30.450.260 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem NO binding associated domain 0.59 45.0 3.77e-01 81.0% 94.7%
4ofzA03 3.30.70.3080 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 50.0 4.89e-01 97.5% 93.3%
3dpuB03 3.30.310.200 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.58 44.0 4.01e-01 82.3% 84.3%
1g8jB00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.58 42.0 3.63e-01 77.2% 92.2%
3ewkA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 41.0 3.79e-01 74.7% 100.0%
3nybA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.57 46.0 4.24e-01 92.4% 90.0%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 44.0 3.60e-01 81.0% 69.4%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.57 41.0 4.14e-01 88.6% 75.9%
3qp1A00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.57 42.0 3.31e-01 79.7% 70.2%
6lgqC01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.57 48.0 4.17e-01 98.7% 94.7%
3ix3A00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.56 43.0 3.55e-01 87.3% 75.5%
1kfiA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.56 42.0 3.65e-01 81.0% 89.6%
3by9B01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 43.0 3.71e-01 84.8% 80.9%
3q6aB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 39.0 3.41e-01 75.9% 70.9%
2kf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 43.0 3.40e-01 84.8% 46.7%
1e50B00 2.40.250.10 Mainly Beta › Beta Barrel › Polyomavirus Enhancer Binding Protein 2; Chain: A; › Core binding factor, beta subunit 0.54 47.0 4.05e-01 100.0% 84.6%
2l8oA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 38.0 3.22e-01 74.7% 73.6%
6zj8D01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 42.0 3.79e-01 86.1% 84.2%
1dd5A02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.54 46.0 4.70e-01 98.7% 100.0%
4s21B02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 39.0 3.52e-01 79.7% 68.9%
3vynA01 2.60.40.3780 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 37.0 3.58e-01 83.5% 65.5%
4hjhA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.53 37.0 3.52e-01 75.9% 72.3%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.53 41.0 3.47e-01 88.6% 49.3%
3r4qA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 41.0 3.55e-01 87.3% 93.9%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.52 39.0 3.89e-01 87.3% 77.1%
2imlA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 45.0 4.03e-01 98.7% 92.0%
3axbA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.52 40.0 3.17e-01 86.1% 77.1%
3lxuX01 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.51 43.0 2.98e-01 100.0% 82.9%
2xa7M01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 38.0 3.30e-01 78.5% 60.0%
1p5dX04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.51 36.0 3.49e-01 75.9% 67.7%
1yy3A02 2.40.10.240 Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like 0.51 40.0 3.76e-01 92.4% 69.7%
4kh9B02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.50 42.0 3.79e-01 94.9% 65.5%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
73522 331.4.1.1 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.69 51.0 4.60e-01 78.5% 72.5%
3969530 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.65 50.0 4.38e-01 82.3% 78.3%
4983901 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.63 46.0 4.00e-01 78.5% 88.8%
3290055 223.1.1.36 a+b three layers › Profilin-like › sensor domains › sensor domains › MLTR_LBD 0.63 48.0 3.77e-01 82.3% 88.8%
4034134 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.62 54.0 4.69e-01 98.7% 96.8%
3498807 223.1.1.11 a+b three layers › Profilin-like › sensor domains › sensor domains › HNOBA 0.61 46.0 3.86e-01 79.7% 91.9%
3498265 223.1.1.11 a+b three layers › Profilin-like › sensor domains › sensor domains › HNOBA 0.61 46.0 3.77e-01 79.7% 92.9%
3848539 58.1.1.1 beta barrels › Oncogene product-like › Oncogene products › Oncogene products › TCL1_MTCP1 0.61 51.0 4.52e-01 92.4% 89.6%
3469965 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 45.0 3.77e-01 79.7% 95.0%
3551510 60.1.2.2 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku,Ku_C 0.60 50.0 3.27e-01 89.9% 56.9%
4072878 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.60 40.0 4.07e-01 84.8% 68.8%
2815818 223.1.1.11 a+b three layers › Profilin-like › sensor domains › sensor domains › HNOBA 0.60 45.0 3.63e-01 81.0% 87.2%
3642150 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.59 39.0 3.75e-01 87.3% 56.8%
3714670 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.59 44.0 4.04e-01 79.7% 85.7%
3389457 223.1.1.11 a+b three layers › Profilin-like › sensor domains › sensor domains › HNOBA 0.59 45.0 3.53e-01 81.0% 86.1%
3596677 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 44.0 4.16e-01 79.7% 94.7%
4379563 375.1.1.289 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF5679 0.58 32.0 4.11e-01 74.7% 95.6%
4796695 223.1.1.11 a+b three layers › Profilin-like › sensor domains › sensor domains › HNOBA 0.58 44.0 3.95e-01 79.7% 89.8%
5062648 11.1.1.171 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_5 0.58 44.0 3.97e-01 86.1% 58.2%
3236774 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.58 50.0 3.34e-01 97.5% 33.5%
4366483 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.57 41.0 4.08e-01 88.6% 70.6%
5035326 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.57 41.0 3.95e-01 74.7% 67.8%
3259124 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 45.0 4.11e-01 84.8% 65.7%
4169658 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.57 41.0 3.78e-01 77.2% 58.3%
5051044 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 35.0 3.71e-01 87.3% 68.6%
3376254 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.56 39.0 3.88e-01 73.4% 76.5%
4945536 223.1.1.24 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 0.56 42.0 3.78e-01 81.0% 96.5%
4031519 3425.1.1.1 a+b three layers › Two-component system yycF/yycG regulatory protein yycH-like › YycH N-terminal domain › YycH N-terminal domain › YycH 0.56 41.0 3.40e-01 78.5% 60.7%
5011536 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.56 48.0 4.13e-01 97.5% 89.2%
3781907 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 41.0 3.37e-01 78.5% 49.0%
4944433 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.55 43.0 3.86e-01 86.1% 91.3%
4990940 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.55 39.0 3.91e-01 77.2% 75.3%
4263644 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 40.0 3.23e-01 78.5% 45.8%
3277423 331.18.1.4 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B 0.54 44.0 3.63e-01 89.9% 65.3%
5069636 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.54 38.0 3.74e-01 75.9% 75.6%
4999117 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.54 38.0 3.67e-01 75.9% 72.6%
5060197 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.54 39.0 3.63e-01 77.2% 71.0%
4056039 1.1.12.1 beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.53 43.0 3.82e-01 98.7% 60.9%
3163712 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.53 38.0 3.55e-01 77.2% 74.3%
4943946 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.53 39.0 3.75e-01 77.2% 76.7%
3517458 274.1.1.10 a+b two layers › Pili subunits › Pili subunits › Pili subunits › PilS 0.53 45.0 4.00e-01 100.0% 92.0%
5046928 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.53 38.0 3.65e-01 77.2% 71.6%
3251994 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 45.0 3.91e-01 100.0% 60.5%
4883715 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.53 38.0 3.58e-01 77.2% 69.0%
3223544 9.3.1.0 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.53 40.0 3.63e-01 84.8% 82.6%
4062178 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.53 41.0 3.97e-01 94.9% 75.6%
1149046 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.53 37.0 3.42e-01 75.9% 65.8%
4965116 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.52 39.0 3.85e-01 93.7% 75.0%
3509602 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.52 38.0 3.23e-01 78.5% 73.3%
5000646 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.52 37.0 3.56e-01 77.2% 73.7%
4973167 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.52 37.0 3.66e-01 77.2% 74.1%
4337723 4000.1.1.1 a+b two layers › Escherichia coli HybE › Escherichia coli HybE › Escherichia coli HybE › NiFe-hyd_HybE 0.51 43.0 3.64e-01 97.5% 54.3%
3230635 2484.1.1.190 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FBA_2 0.51 44.0 3.08e-01 97.5% 48.5%
4989871 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 37.0 2.90e-01 93.7% 34.1%
3948528 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 42.0 3.85e-01 94.9% 74.5%
4563102 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.50 36.0 3.20e-01 77.2% 76.0%
D2 medium residues 1-65
PDB