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NC_055737.1__YP_010093582.1__KNT81_gp045__00045

Bact-Vir

NC_055737.1__YP_010093582.1__KNT81_gp045__00045

Identity

Accession:
NC_055737 ↗
Kingdom:
phage

Quality

91.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Bragavirus› Proteus_phage_phiP4-3

TaxID: 2065203

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-69
PDB
Domain cluster: rep: NC_042067.1__YP_009618328.1__FDI95_gp191__00269__D2-73
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 46.0 5.10e-01 98.5% 92.0%
1vwxM01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 47.0 4.43e-01 100.0% 57.6%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 52.0 5.00e-01 100.0% 72.2%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 52.0 5.38e-01 100.0% 89.1%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 45.0 4.46e-01 100.0% 64.4%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 51.0 5.41e-01 100.0% 96.5%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.67 45.0 4.91e-01 100.0% 90.4%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 51.0 5.05e-01 100.0% 82.9%
1jb0E00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.64 55.0 5.50e-01 100.0% 94.2%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 44.0 4.55e-01 98.5% 76.9%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 51.0 5.21e-01 100.0% 92.4%
7tuvA01 2.40.50.690 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 42.0 3.81e-01 77.9% 49.5%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 44.0 4.64e-01 100.0% 84.7%
2dlpA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 49.0 4.57e-01 100.0% 68.2%
4c92B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 47.0 4.18e-01 100.0% 54.3%
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 51.0 4.95e-01 100.0% 84.2%
3vygD00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.58 50.0 4.24e-01 98.5% 73.9%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.58 45.0 3.92e-01 100.0% 54.1%
4jlxA02 3.30.460.90 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.57 40.0 3.05e-01 73.5% 83.9%
2j3rB00 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.57 41.0 3.17e-01 76.5% 79.6%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 45.0 4.23e-01 100.0% 70.9%
1gcbA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 48.0 3.03e-01 100.0% 27.5%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 39.0 3.94e-01 89.7% 76.1%
3ba3B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 45.0 3.58e-01 92.6% 80.4%
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 46.0 3.70e-01 94.1% 88.1%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.55 33.0 3.69e-01 94.1% 89.1%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 40.0 3.76e-01 100.0% 65.1%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 4.01e-01 98.5% 78.9%
2arzA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 43.0 3.42e-01 92.6% 78.0%
4izxA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 42.0 3.44e-01 94.1% 97.8%
1qxmA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 42.0 3.42e-01 95.6% 98.6%
4bf3A00 2.30.31.50 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F 0.51 38.0 3.19e-01 89.7% 42.9%
1mi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 3.83e-01 100.0% 83.8%
3nswA00 2.40.50.780 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 41.0 3.66e-01 94.1% 62.3%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 34.0 3.61e-01 95.6% 94.2%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3302829 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.69 48.0 4.91e-01 100.0% 76.9%
158943 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 52.0 5.01e-01 100.0% 72.2%
5065747 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.67 45.0 4.16e-01 100.0% 53.3%
3765126 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 50.0 5.43e-01 97.1% 100.0%
4524466 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 46.0 4.63e-01 100.0% 71.4%
3222210 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 49.0 4.95e-01 100.0% 80.0%
3910433 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 46.0 4.67e-01 100.0% 76.9%
3323530 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.64 49.0 4.97e-01 100.0% 87.7%
3900236 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 49.0 5.10e-01 100.0% 96.7%
3437523 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.63 46.0 4.61e-01 100.0% 77.1%
4278184 4.1.1.52 ↗ beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.63 49.0 4.70e-01 100.0% 73.8%
3482868 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 46.0 4.94e-01 98.5% 100.0%
3281945 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 51.0 4.66e-01 100.0% 68.9%
3216746 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.62 46.0 4.92e-01 97.1% 100.0%
3482646 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 49.0 3.61e-01 100.0% 30.5%
4263339 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.61 49.0 4.66e-01 100.0% 75.0%
4813032 4.1.1.328 ↗ beta barrels › SH3 › SH3 › SH3 › Sm_like 0.60 50.0 4.82e-01 100.0% 79.7%
3469800 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 44.0 4.28e-01 98.5% 70.0%
3627859 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.59 45.0 4.41e-01 100.0% 77.3%
3795121 4.1.1.110 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_FRX1 0.58 38.0 3.93e-01 100.0% 70.8%
4014881 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 43.0 4.55e-01 98.5% 93.3%
3923813 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 45.0 4.58e-01 98.5% 87.7%
3213653 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 49.0 4.71e-01 97.1% 92.5%
3749194 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.58 43.0 4.38e-01 97.1% 85.9%
3243188 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 48.0 4.69e-01 100.0% 85.3%
3987498 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 39.0 3.65e-01 100.0% 56.5%
4358722 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.57 46.0 4.08e-01 98.5% 59.0%
3964560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 42.0 4.22e-01 100.0% 80.0%
3233672 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.56 40.0 3.58e-01 100.0% 52.0%
3898170 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.56 49.0 4.77e-01 100.0% 93.3%
3241890 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 43.0 3.88e-01 100.0% 59.0%
3625263 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 47.0 4.18e-01 100.0% 65.0%
3953882 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.56 45.0 3.71e-01 91.2% 90.8%
4194302 4212.1.1.1 ↗ beta barrels › FimD N-terminal domain-like › FimD N-terminal domain-like › FimD N-terminal domain-like › PapC_N 0.55 46.0 3.89e-01 95.6% 64.2%
313834 4.1.1.27 ↗ beta barrels › SH3 › SH3 › SH3 › NHase_beta_C 0.55 50.0 4.11e-01 100.0% 69.2%
3925589 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 47.0 4.68e-01 100.0% 91.4%
3486329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 38.0 3.93e-01 98.5% 80.0%
4031670 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.54 42.0 4.43e-01 98.5% 100.0%
4017483 7579.1.1.44 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 0.54 43.0 3.00e-01 91.2% 67.3%
4269858 4.1.1.312 ↗ beta barrels › SH3 › SH3 › SH3 › Med13_N 0.53 46.0 4.09e-01 98.5% 83.0%
5025364 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.53 38.0 3.74e-01 100.0% 70.7%
3786412 4.1.1.344 ↗ beta barrels › SH3 › SH3 › SH3 › PF31193 0.53 42.0 4.07e-01 100.0% 76.2%
3285969 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.53 43.0 3.50e-01 92.6% 80.0%
3833012 4.1.1.239 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.53 43.0 4.09e-01 100.0% 74.1%
3592075 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 44.0 4.19e-01 100.0% 77.6%
3995388 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.52 44.0 3.70e-01 100.0% 54.2%
3675653 4.1.1.239 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.52 45.0 4.38e-01 100.0% 88.0%
3200839 219.1.1.93 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 0.52 44.0 3.43e-01 100.0% 43.8%
3492942 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.51 38.0 3.12e-01 83.8% 64.1%
4929472 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 41.0 3.98e-01 100.0% 77.5%
3298800 708.1.2.12 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › At4g08330 0.51 43.0 3.70e-01 100.0% 94.2%
3678872 4.1.1.239 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.51 44.0 4.33e-01 100.0% 92.0%
3678015 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.50 40.0 3.22e-01 95.6% 70.9%