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NC_055737.1__YP_010093681.1__KNT81_gp269__00144
Bact-VirNC_055737.1__YP_010093681.1__KNT81_gp269__00144
Identity
- Accession:
- NC_055737 ↗
- Kingdom:
- phage
Quality
94.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Bragavirus›
Proteus_phage_phiP4-3
TaxID: 2065203
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-85
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ib8A02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.67 | 40.0 | 4.34e-01 | 93.8% | 71.6% |
| 1vq8Q00 | 2.30.30.70 | Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 | 0.67 | 44.0 | 4.16e-01 | 93.8% | 56.8% |
| 7z0sE02 | 1.10.645.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B | 0.61 | 51.0 | 3.48e-01 | 95.1% | 83.9% |
| 1r6vA01 | 2.60.40.1800 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 43.0 | 3.80e-01 | 76.5% | 75.2% |
| 4aghA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.60 | 37.0 | 3.72e-01 | 100.0% | 61.3% |
| 2l97A01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.59 | 48.0 | 4.54e-01 | 91.4% | 73.7% |
| 1cc1L00 | 1.10.645.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B | 0.59 | 52.0 | 3.19e-01 | 97.5% | 79.1% |
| 1e3dB00 | 1.10.645.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B | 0.59 | 51.0 | 3.13e-01 | 97.5% | 79.9% |
| 7odhL01 | 1.10.645.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B | 0.59 | 51.0 | 3.12e-01 | 97.5% | 78.7% |
| 1vw4M01 | 2.30.30.790 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 40.0 | 3.46e-01 | 97.5% | 43.9% |
| 4exrA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 39.0 | 4.12e-01 | 100.0% | 77.5% |
| 4omfA00 | 1.10.645.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B | 0.58 | 51.0 | 3.28e-01 | 97.5% | 76.6% |
| 4ghnA02 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.58 | 48.0 | 4.48e-01 | 93.8% | 84.8% |
| 7w6yA02 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.56 | 44.0 | 4.40e-01 | 86.4% | 90.1% |
| 1cbiA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 37.0 | 3.17e-01 | 100.0% | 40.4% |
| 1t6aA02 | 3.30.310.120 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein | 0.56 | 29.0 | 3.03e-01 | 76.5% | 51.3% |
| 2xotA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 43.0 | 4.24e-01 | 85.2% | 83.7% |
| 2jheA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 45.0 | 4.12e-01 | 95.1% | 73.1% |
| 1s6lA02 | 3.15.10.60 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Alkylmercury lyase | 0.52 | 37.0 | 3.24e-01 | 100.0% | 47.3% |
| 5c17A00 | 3.30.450.410 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.52 | 39.0 | 2.99e-01 | 100.0% | 32.0% |
| 4c0dB00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.51 | 32.0 | 2.52e-01 | 92.6% | 26.7% |
| 1tm0A01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.51 | 43.0 | 3.47e-01 | 93.8% | 80.5% |
| 4dm5A00 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.51 | 40.0 | 3.93e-01 | 84.0% | 81.6% |
| 1bihA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 38.0 | 3.78e-01 | 82.7% | 94.3% |
| 2qguA01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 46.0 | 4.29e-01 | 100.0% | 93.1% |
| 7d8gA01 | 2.40.380.10 | Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like | 0.50 | 39.0 | 3.15e-01 | 100.0% | 41.9% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3711519 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.68 | 42.0 | 3.26e-01 | 100.0% | 29.4% |
| 3842363 | 1.1.5.76 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT | 0.63 | 43.0 | 3.89e-01 | 93.8% | 51.8% |
| 3821287 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.63 | 43.0 | 3.54e-01 | 96.3% | 40.0% |
| 4272564 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.63 | 43.0 | 3.89e-01 | 97.5% | 52.8% |
| 5067801 | 244.4.1.2 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › NiFeSe_Hases | 0.63 | 49.0 | 4.67e-01 | 95.1% | 71.6% |
| 4948113 | 244.4.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit | 0.62 | 51.0 | 4.92e-01 | 97.5% | 78.9% |
| 5054438 | 244.4.1.1 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Complex1_49kDa | 0.62 | 51.0 | 4.78e-01 | 95.1% | 73.0% |
| 4953685 | 244.4.1.2 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › NiFeSe_Hases | 0.60 | 48.0 | 4.67e-01 | 95.1% | 77.8% |
| 5013051 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.60 | 37.0 | 3.15e-01 | 100.0% | 37.7% |
| 4934598 | 244.4.1.2 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › NiFeSe_Hases | 0.60 | 49.0 | 4.68e-01 | 97.5% | 75.8% |
| 4063634 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.60 | 42.0 | 3.62e-01 | 97.5% | 47.6% |
| 3889979 | 913.1.1.0 ↗ | few secondary structure elements › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) | 0.60 | 35.0 | 3.94e-01 | 96.3% | 81.8% |
| 3964101 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.59 | 39.0 | 4.42e-01 | 100.0% | 91.7% |
| 3974671 | 243.19.1.0 ↗ | a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains | 0.59 | 44.0 | 4.37e-01 | 100.0% | 76.5% |
| 1734768 | 4187.1.1.1 ↗ | a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB | 0.58 | 39.0 | 4.40e-01 | 98.8% | 98.3% |
| 4480914 | 244.4.1.2 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › NiFeSe_Hases | 0.58 | 48.0 | 4.55e-01 | 95.1% | 76.8% |
| 5020773 | 244.4.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit | 0.58 | 50.0 | 4.64e-01 | 96.3% | 78.1% |
| 4048985 | 244.4.1.2 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › NiFeSe_Hases | 0.58 | 47.0 | 4.44e-01 | 97.5% | 73.0% |
| 5003966 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.57 | 33.0 | 3.59e-01 | 100.0% | 69.2% |
| 3575459 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.57 | 35.0 | 2.92e-01 | 100.0% | 33.3% |
| 3588750 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.57 | 44.0 | 4.61e-01 | 100.0% | 89.3% |
| 3616220 | 77.3.1.3 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN | 0.57 | 35.0 | 2.81e-01 | 100.0% | 31.2% |
| 5033799 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 45.0 | 4.25e-01 | 88.9% | 89.9% |
| 5035145 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 46.0 | 4.32e-01 | 90.1% | 91.8% |
| 4133650 | 244.4.1.1 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Complex1_49kDa | 0.56 | 47.0 | 4.51e-01 | 95.1% | 80.0% |
| 4647338 | 244.4.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit | 0.55 | 48.0 | 4.47e-01 | 97.5% | 83.8% |
| 3851450 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.55 | 43.0 | 4.07e-01 | 85.2% | 72.0% |
| 3574976 | 4184.1.1.2 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b | 0.55 | 35.0 | 4.01e-01 | 100.0% | 94.5% |
| 3949537 | 243.3.1.29 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF4333 | 0.54 | 43.0 | 4.45e-01 | 97.5% | 94.7% |
| 4182548 | 244.4.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit | 0.54 | 42.0 | 4.01e-01 | 95.1% | 71.6% |
| 4031136 | 6043.1.1.3 ↗ | a+b two layers › yfeY-like › yfeY-like › yfeY-like › CAP_assoc_N | 0.53 | 36.0 | 4.22e-01 | 85.2% | 96.7% |
| 3965976 | 809.1.1.1 ↗ | a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › SmpA_OmlA | 0.52 | 42.0 | 4.06e-01 | 90.1% | 85.1% |
| 3536120 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.51 | 39.0 | 3.74e-01 | 84.0% | 89.5% |
| 3908899 | 213.1.1.35 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_CG | 0.50 | 29.0 | 2.76e-01 | 98.8% | 46.5% |