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NC_055737.1__YP_010093774.1__KNT81_gp176__00237

Bact-Vir

NC_055737.1__YP_010093774.1__KNT81_gp176__00237

Identity

Accession:
NC_055737 ↗
Kingdom:
phage

Quality

83.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Bragavirus› Proteus_phage_phiP4-3

TaxID: 2065203

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 68-124
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ybzA00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.97 87.0 7.74e-01 96.5% 71.1%
3rmiA00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.95 90.0 7.08e-01 100.0% 63.8%
6cnzF00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.95 90.0 6.24e-01 100.0% 42.4%
1ecmB00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.95 89.0 7.31e-01 100.0% 70.5%
2d8dB00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.95 84.0 7.27e-01 94.7% 75.9%
2fp1B00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.94 88.0 6.10e-01 100.0% 40.9%
5ts9B00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.92 85.0 5.98e-01 100.0% 41.6%
2gbbB00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.92 85.0 6.04e-01 100.0% 43.2%
2gtvX00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.89 81.0 6.55e-01 100.0% 65.4%
2zopA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.74 64.0 5.15e-01 98.2% 94.6%
6tkvA01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.70 50.0 4.73e-01 75.4% 66.2%
3l1nA02 1.20.1280.140 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.70 62.0 5.40e-01 100.0% 85.1%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.70 50.0 3.79e-01 75.4% 34.6%
3eujB00 1.10.225.40 Mainly Alpha › Orthogonal Bundle › NK-Lysin › MukF, C-terminal domain 0.68 60.0 5.17e-01 100.0% 95.6%
3c4wB01 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.67 46.0 3.17e-01 71.9% 23.4%
2gv9A05 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.67 47.0 4.69e-01 86.0% 71.2%
3g2eB00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.67 60.0 4.18e-01 100.0% 35.1%
3on3B00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.67 60.0 4.23e-01 100.0% 37.7%
2lsgA00 1.20.58.1280 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DNA repair protein Rev1, C-terminal domain 0.67 57.0 4.88e-01 100.0% 58.8%
1m5iA00 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.67 47.0 3.84e-01 73.7% 47.6%
2gsqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.66 46.0 3.76e-01 78.9% 38.9%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.66 46.0 4.19e-01 73.7% 89.6%
4errB00 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 45.0 4.01e-01 78.9% 50.6%
2iakA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 53.0 3.74e-01 94.7% 41.1%
8a1gC01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.64 46.0 3.27e-01 84.2% 24.3%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.62 51.0 4.34e-01 94.7% 79.6%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 47.0 3.84e-01 86.0% 43.9%
4q20A01 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.61 42.0 3.74e-01 84.2% 51.2%
1s35A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 50.0 4.21e-01 94.7% 82.2%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 52.0 5.08e-01 100.0% 87.3%
1quuA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 52.0 4.10e-01 100.0% 69.0%
3uumA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 49.0 3.91e-01 94.7% 70.5%
2q0oC00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.58 44.0 3.82e-01 80.7% 54.7%
3p42A02 6.10.250.2280 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.58 40.0 3.85e-01 75.4% 97.1%
2xzmV01 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.58 49.0 4.84e-01 100.0% 88.5%
4l8jA04 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.58 45.0 4.49e-01 86.0% 81.4%
1gaxA05 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.58 45.0 4.13e-01 86.0% 65.8%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.58 45.0 4.42e-01 86.0% 80.0%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.57 42.0 3.85e-01 80.7% 62.0%
7ymiZ01 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.57 43.0 4.28e-01 80.7% 82.8%
1ku9A02 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.57 39.0 3.83e-01 73.7% 70.3%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.57 41.0 4.00e-01 78.9% 78.1%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.57 43.0 3.93e-01 100.0% 61.5%
2f48A03 1.10.10.480 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phosphofructokinase; domain 3 0.56 47.0 4.37e-01 98.2% 86.7%
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.56 45.0 4.01e-01 96.5% 94.4%
4malA00 1.20.58.2200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 42.0 4.21e-01 100.0% 78.0%
2dk8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 4.09e-01 100.0% 75.4%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.56 45.0 3.79e-01 93.0% 67.0%
4gxbA02 1.20.80.60 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.55 39.0 3.87e-01 77.2% 75.8%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.54 42.0 3.68e-01 87.7% 55.7%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.53 40.0 3.20e-01 84.2% 39.8%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 45.0 3.78e-01 98.2% 93.1%
3c8tA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.52 45.0 3.79e-01 98.2% 71.1%
1ewrA02 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.51 45.0 3.59e-01 100.0% 50.4%
1c3cA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.51 43.0 3.69e-01 94.7% 74.7%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4948274 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.97 92.0 8.20e-01 100.0% 89.3%
5075474 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.96 90.0 7.89e-01 100.0% 83.7%
4932440 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.95 90.0 7.66e-01 100.0% 78.8%
4008532 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.95 89.0 7.62e-01 100.0% 78.8%
5051498 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.95 85.0 7.06e-01 94.7% 68.9%
4927512 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.94 84.0 7.04e-01 94.7% 71.1%
4934951 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.94 84.0 7.03e-01 94.7% 71.1%
5066382 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.94 88.0 7.38e-01 100.0% 74.4%
3603891 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.94 88.0 7.25e-01 100.0% 72.3%
5011971 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.94 84.0 7.32e-01 94.7% 80.0%
3589699 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.93 85.0 7.40e-01 96.5% 80.0%
3061239 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.93 87.0 6.13e-01 100.0% 41.7%
4521190 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.93 86.0 7.36e-01 98.2% 81.2%
4953325 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.93 86.0 7.09e-01 100.0% 71.6%
5026124 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.92 83.0 7.94e-01 98.2% 84.6%
1884774 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.92 84.0 7.13e-01 98.2% 73.6%
4983481 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.89 81.0 6.69e-01 98.2% 69.5%
2097520 164.1.1.1 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.86 73.0 6.38e-01 93.0% 67.9%
3586533 109.4.1.898 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_leprecan 0.76 53.0 3.54e-01 73.7% 20.0%
3708119 3285.1.1.1 ↗ alpha duplicates or obligate multimers › Alix V domain › Alix V domain › Alix V domain › ALIX_LYPXL_bnd 0.74 55.0 3.31e-01 78.9% 13.1%
3825757 101.35.1.23 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Ovate 0.70 63.0 6.01e-01 100.0% 86.2%
1868087 622.1.1.2 ↗ alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HsbA 0.70 62.0 5.43e-01 100.0% 86.0%
4606236 192.7.1.3 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Phe_tRNA-synt_N 0.69 62.0 5.31e-01 100.0% 78.9%
4349607 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.69 48.0 3.78e-01 94.7% 37.3%
3286299 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.69 48.0 3.85e-01 80.7% 38.2%
3292409 101.35.1.23 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Ovate 0.68 61.0 6.00e-01 100.0% 93.3%
3735607 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.67 49.0 4.38e-01 77.2% 63.7%
4200387 192.7.1.3 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Phe_tRNA-synt_N 0.67 59.0 5.09e-01 100.0% 77.8%
3244407 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.67 52.0 5.16e-01 94.7% 80.0%
4322551 604.23.1.0 ↗ alpha bundles › Spectrin repeat-like › Sbi complement-binding domain › Sbi complement-binding domain 0.67 49.0 4.98e-01 94.7% 81.8%
4287137 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.66 52.0 4.56e-01 100.0% 56.7%
4039014 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.66 48.0 3.78e-01 84.2% 39.1%
4237249 109.4.1.95 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 0.66 48.0 3.51e-01 98.2% 29.3%
3497911 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.66 48.0 3.60e-01 84.2% 32.6%
5068216 632.18.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 0.65 45.0 4.47e-01 73.7% 70.0%
5060982 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.64 46.0 4.25e-01 77.2% 62.7%
3407482 102.1.1.114 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › PF26701 0.64 55.0 5.35e-01 100.0% 90.8%
4981744 6091.1.1.0 ↗ alpha bundles › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase 0.64 46.0 4.72e-01 77.2% 80.0%
5060803 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.64 42.0 4.32e-01 82.5% 70.9%
4981739 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.62 41.0 4.21e-01 82.5% 70.9%
5059135 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.62 44.0 4.13e-01 77.2% 61.4%
5059134 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.61 45.0 4.43e-01 78.9% 75.0%
3974231 5086.1.1.84 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND 0.60 45.0 4.19e-01 78.9% 100.0%
3844040 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.60 42.0 4.01e-01 71.9% 100.0%
3619641 604.1.1.154 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF27021 0.60 51.0 4.27e-01 100.0% 73.3%
1002194 192.23.1.1 ↗ alpha bundles › Long alpha-hairpin › DUF683 › DUF683 › Rop-like 0.60 45.0 4.22e-01 80.7% 66.2%
3387484 375.1.9.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase 0.60 46.0 4.05e-01 84.2% 58.8%
3583169 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.58 46.0 4.10e-01 86.0% 76.2%
3510680 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.56 40.0 3.79e-01 77.2% 78.6%
1346823 109.4.1.210 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 0.54 40.0 3.91e-01 82.5% 75.0%
3579211 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.53 42.0 3.79e-01 93.0% 74.1%
4001204 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.52 42.0 3.64e-01 93.0% 66.3%