←Back to structures
NC_055737.1__YP_010093797.1__KNT81_gp153__00260
Bact-VirNC_055737.1__YP_010093797.1__KNT81_gp153__00260
Identity
- Accession:
- NC_055737 ↗
- Kingdom:
- phage
Quality
69.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Bragavirus›
Proteus_phage_phiP4-3
TaxID: 2065203
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-104
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2heqA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.63 | 34.0 | 4.49e-01 | 91.1% | 100.0% |
| 3j7aF03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 37.0 | 4.19e-01 | 98.0% | 81.7% |
| 1ugiD00 | 3.10.450.20 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor | 0.61 | 39.0 | 4.26e-01 | 79.2% | 79.3% |
| 6az1E03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 36.0 | 4.08e-01 | 98.0% | 81.9% |
| 3ab1B01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.59 | 48.0 | 3.78e-01 | 88.1% | 74.1% |
| 1rl2A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 32.0 | 4.03e-01 | 97.0% | 98.2% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 33.0 | 3.97e-01 | 92.1% | 91.9% |
| 4krtB03 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.57 | 37.0 | 4.33e-01 | 92.1% | 100.0% |
| 1nr4C00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 35.0 | 4.21e-01 | 98.0% | 95.5% |
| 1ohfA03 | 2.60.270.70 | Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › | 0.56 | 39.0 | 3.55e-01 | 80.2% | 51.8% |
| 3urgA02 | 2.30.30.530 | Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain | 0.55 | 34.0 | 4.02e-01 | 93.1% | 98.4% |
| 6b4oA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 45.0 | 4.28e-01 | 92.1% | 95.8% |
| 1qwoA01 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.52 | 43.0 | 2.89e-01 | 90.1% | 98.5% |
| 1e0bA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 30.0 | 3.57e-01 | 73.3% | 93.4% |
| 4qmgC01 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 36.0 | 3.13e-01 | 74.3% | 71.1% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5065184 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 33.0 | 4.69e-01 | 71.3% | 97.8% |
| 5039633 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.67 | 33.0 | 3.85e-01 | 87.1% | 63.5% |
| 3622366 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.64 | 33.0 | 4.43e-01 | 76.2% | 100.0% |
| 4605602 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 37.0 | 4.39e-01 | 98.0% | 89.2% |
| 1821014 | 4.1.1.70 ↗ | beta barrels › SH3 › SH3 › SH3 › Tsr0524-like | 0.62 | 39.0 | 4.65e-01 | 96.0% | 98.4% |
| 4300449 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.62 | 36.0 | 4.33e-01 | 95.0% | 89.2% |
| 4271974 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.61 | 35.0 | 4.20e-01 | 96.0% | 89.1% |
| 4027502 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 39.0 | 4.60e-01 | 94.1% | 100.0% |
| 4022780 | 243.18.1.0 ↗ | a+b two layers › Cystatin-like › Maltokinase N-terminal domain › Maltokinase N-terminal domain | 0.58 | 41.0 | 4.17e-01 | 82.2% | 73.8% |
| 4973274 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.56 | 31.0 | 3.97e-01 | 71.3% | 98.2% |
| 3613178 | 220.1.1.11 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru | 0.53 | 44.0 | 4.04e-01 | 100.0% | 68.9% |
| 3628520 | 5.1.4.308 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, LLGL | 0.52 | 39.0 | 2.33e-01 | 81.2% | 93.1% |
| 4376886 | 4.1.1.241 ↗ | beta barrels › SH3 › SH3 › SH3 › NifZ | 0.51 | 37.0 | 4.05e-01 | 97.0% | 96.2% |
| 3596658 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.51 | 37.0 | 3.10e-01 | 75.2% | 62.3% |
| 3261195 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.51 | 36.0 | 3.14e-01 | 74.3% | 72.5% |
| 4944242 | 5.1.4.40 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 | 0.50 | 40.0 | 2.68e-01 | 89.1% | 86.2% |
| 4510334 | 2.6.1.1 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase | 0.50 | 35.0 | 3.31e-01 | 73.3% | 82.4% |
D2
medium
residues 107-136