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NC_055738.1__YP_010093879.1__KNT82_gp72__00072
Bact-VirNC_055738.1__YP_010093879.1__KNT82_gp72__00072
Identity
- Accession:
- NC_055738 ↗
- Kingdom:
- phage
Quality
86.9
mean pLDDT
Taxonomy
TaxID: 2079415
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-56
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3iibA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.62 | 49.0 | 3.21e-01 | 96.3% | 34.9% |
| 2nlkA02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.62 | 52.0 | 3.41e-01 | 100.0% | 26.2% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.61 | 44.0 | 4.52e-01 | 96.3% | 89.6% |
| 6secA03 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.59 | 49.0 | 3.21e-01 | 100.0% | 26.4% |
| 1ut7B01 | 2.170.150.80 | Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › NAC domain | 0.59 | 50.0 | 3.92e-01 | 100.0% | 62.4% |
| 1gd5A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.59 | 41.0 | 3.19e-01 | 94.4% | 30.8% |
| 2w3xB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.58 | 49.0 | 3.70e-01 | 100.0% | 59.0% |
| 4ybvA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.57 | 48.0 | 3.84e-01 | 100.0% | 63.6% |
| 1gkuB07 | 2.60.510.20 | Mainly Beta › Sandwich › EV matrix protein fold › | 0.57 | 47.0 | 3.97e-01 | 100.0% | 56.9% |
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 39.0 | 3.72e-01 | 96.3% | 60.6% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 40.0 | 3.92e-01 | 98.1% | 68.3% |
| 2vxaA00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.56 | 38.0 | 3.66e-01 | 83.3% | 59.1% |
| 3e1eC00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 48.0 | 3.63e-01 | 100.0% | 56.0% |
| 1cx8A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.56 | 45.0 | 2.95e-01 | 98.1% | 33.6% |
| 3k7cA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 47.0 | 3.86e-01 | 100.0% | 75.9% |
| 1rerA01 | 2.60.98.10 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 | 0.56 | 38.0 | 2.98e-01 | 77.8% | 31.0% |
| 3lbeB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 47.0 | 3.67e-01 | 100.0% | 59.7% |
| 6ro0D00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 40.0 | 3.37e-01 | 100.0% | 41.8% |
| 5ygbA01 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 44.0 | 3.44e-01 | 94.4% | 85.7% |
| 4ikbA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.54 | 39.0 | 3.06e-01 | 79.6% | 34.1% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.54 | 38.0 | 3.84e-01 | 98.1% | 78.6% |
| 5aj3E01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.53 | 42.0 | 3.85e-01 | 96.3% | 82.7% |
| 1vwxf00 | 2.40.10.190 | Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 | 0.53 | 36.0 | 2.93e-01 | 72.2% | 44.0% |
| 1h2iA01 | 3.30.390.80 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 | 0.52 | 43.0 | 3.30e-01 | 100.0% | 54.1% |
| 4fx9A03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.52 | 41.0 | 3.40e-01 | 100.0% | 45.1% |
| 4iupA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 39.0 | 3.71e-01 | 98.1% | 66.7% |
| 2qiyA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 41.0 | 3.31e-01 | 100.0% | 59.0% |
| 2w01B00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.52 | 39.0 | 2.81e-01 | 88.9% | 95.4% |
| 5cflA02 | 3.40.50.12100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein | 0.52 | 41.0 | 3.18e-01 | 98.1% | 39.5% |
| 3cgbA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.52 | 41.0 | 3.45e-01 | 100.0% | 47.3% |
| 3mwcA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.51 | 38.0 | 3.03e-01 | 87.0% | 37.0% |
| 7q5yB01 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.51 | 42.0 | 3.41e-01 | 100.0% | 45.0% |
| 1q4tA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 42.0 | 3.27e-01 | 100.0% | 56.3% |
| 5c94A00 | 2.40.10.250 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 | 0.51 | 42.0 | 3.38e-01 | 96.3% | 62.1% |
| 5bkaE01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 41.0 | 3.27e-01 | 100.0% | 56.1% |
| 2qgyB01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.51 | 39.0 | 3.03e-01 | 94.4% | 35.0% |
| 7arcC01 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.51 | 44.0 | 3.32e-01 | 100.0% | 41.5% |
| 1ar0A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 41.0 | 3.29e-01 | 98.1% | 65.6% |
| 3bjsA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.50 | 36.0 | 2.98e-01 | 81.5% | 41.9% |
| 6fu4A01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 42.0 | 3.04e-01 | 96.3% | 100.0% |
ECOD (59)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3247792 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.69 | 46.0 | 3.60e-01 | 75.9% | 31.7% |
| 3412668 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.67 | 47.0 | 3.67e-01 | 77.8% | 33.3% |
| 3781935 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.65 | 49.0 | 3.76e-01 | 81.5% | 35.2% |
| 5079843 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.65 | 47.0 | 4.43e-01 | 96.3% | 64.6% |
| 4522298 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 43.0 | 4.66e-01 | 75.9% | 95.0% |
| 3954203 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.63 | 52.0 | 4.84e-01 | 100.0% | 90.7% |
| 3251342 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.63 | 51.0 | 4.11e-01 | 100.0% | 43.3% |
| 3741279 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.62 | 44.0 | 3.30e-01 | 75.9% | 30.7% |
| 4966827 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.62 | 52.0 | 4.07e-01 | 96.3% | 86.7% |
| 3914493 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.61 | 52.0 | 2.97e-01 | 100.0% | 12.8% |
| 4289169 | 814.1.1.1 ↗ | a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase › Rv2949c-like | 0.61 | 51.0 | 3.79e-01 | 100.0% | 34.8% |
| 3948467 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.61 | 43.0 | 4.17e-01 | 98.1% | 66.2% |
| 4077367 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.60 | 43.0 | 4.20e-01 | 98.1% | 67.7% |
| 4952914 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 46.0 | 4.58e-01 | 92.6% | 84.7% |
| 2141857 | 12.3.1.6 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N | 0.60 | 49.0 | 3.20e-01 | 100.0% | 25.4% |
| 5018717 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 49.0 | 4.90e-01 | 100.0% | 96.4% |
| 3670792 | 243.3.1.67 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Phytochelatin_C | 0.60 | 48.0 | 4.58e-01 | 100.0% | 76.9% |
| 4952318 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 48.0 | 4.60e-01 | 98.1% | 98.5% |
| 4952724 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 48.0 | 3.84e-01 | 100.0% | 52.0% |
| 3420340 | 708.1.1.1 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM | 0.58 | 48.0 | 3.61e-01 | 100.0% | 58.7% |
| 3550844 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.58 | 42.0 | 3.05e-01 | 77.8% | 27.5% |
| 5008812 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.58 | 48.0 | 4.03e-01 | 100.0% | 57.1% |
| 3741417 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.58 | 41.0 | 4.08e-01 | 83.3% | 76.4% |
| 4890504 | 330.1.1.21 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5_C | 0.57 | 40.0 | 3.76e-01 | 77.8% | 71.8% |
| 1582813 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.57 | 43.0 | 3.37e-01 | 100.0% | 34.0% |
| 3584555 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.57 | 44.0 | 4.11e-01 | 98.1% | 67.1% |
| 5030191 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.57 | 47.0 | 3.69e-01 | 92.6% | 86.1% |
| 4982277 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.57 | 40.0 | 3.82e-01 | 75.9% | 67.7% |
| 3393937 | 5.1.4.323 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR75_1st | 0.57 | 40.0 | 2.53e-01 | 100.0% | 12.7% |
| 3349375 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.56 | 46.0 | 3.61e-01 | 100.0% | 46.7% |
| 3627576 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 43.0 | 4.09e-01 | 98.1% | 72.3% |
| 4970648 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.56 | 40.0 | 4.14e-01 | 96.3% | 88.0% |
| 4990926 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.55 | 40.0 | 4.14e-01 | 96.3% | 88.0% |
| 3360403 | 4.26.1.0 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 | 0.55 | 43.0 | 4.47e-01 | 92.6% | 94.0% |
| 4820757 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.55 | 37.0 | 3.03e-01 | 74.1% | 35.5% |
| 3963855 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.55 | 45.0 | 3.01e-01 | 94.4% | 34.9% |
| 3594762 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.55 | 44.0 | 4.06e-01 | 100.0% | 81.2% |
| 3510700 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.55 | 45.0 | 3.84e-01 | 100.0% | 61.0% |
| 3961802 | 243.5.1.9 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › UPF0182 | 0.55 | 45.0 | 3.18e-01 | 100.0% | 29.5% |
| 3743526 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 43.0 | 3.53e-01 | 100.0% | 43.3% |
| 3739035 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 44.0 | 4.32e-01 | 96.3% | 81.7% |
| 4997648 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.54 | 40.0 | 4.09e-01 | 96.3% | 88.0% |
| 4929282 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.54 | 40.0 | 3.79e-01 | 100.0% | 65.3% |
| 4971344 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 42.0 | 4.33e-01 | 96.3% | 94.0% |
| 3663237 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.53 | 41.0 | 3.78e-01 | 94.4% | 71.2% |
| 3785652 | 243.1.1.2 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 | 0.53 | 42.0 | 3.23e-01 | 100.0% | 56.2% |
| 3785904 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 42.0 | 4.33e-01 | 94.4% | 96.0% |
| 3770801 | 4.1.1.248 ↗ | beta barrels › SH3 › SH3 › SH3 › CABIT | 0.52 | 37.0 | 3.21e-01 | 100.0% | 45.3% |
| 3670182 | 2.1.1.1 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 | 0.52 | 37.0 | 3.07e-01 | 92.6% | 36.8% |
| 3423922 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.52 | 41.0 | 3.45e-01 | 100.0% | 47.4% |
| 3849805 | 3398.1.1.1 ↗ | a/b three-layered sandwiches › STING C-terminal domain › STING C-terminal domain › STING C-terminal domain › TMEM173 | 0.52 | 41.0 | 2.92e-01 | 98.1% | 25.2% |
| 3435224 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.51 | 40.0 | 3.84e-01 | 100.0% | 78.5% |
| 165020 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.51 | 38.0 | 3.10e-01 | 92.6% | 38.1% |
| 3591102 | 277.1.1.0 ↗ | a+b two layers › PX domain › PX domain › PX domain | 0.51 | 36.0 | 2.77e-01 | 79.6% | 28.7% |
| 3249604 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.51 | 37.0 | 2.57e-01 | 83.3% | 20.9% |
| 3710733 | 243.1.1.2 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 | 0.51 | 40.0 | 3.31e-01 | 98.1% | 71.7% |
| 2545212 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.50 | 40.0 | 2.94e-01 | 100.0% | 57.4% |
| 3437669 | 708.1.2.12 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › At4g08330 | 0.50 | 39.0 | 3.30e-01 | 96.3% | 73.4% |
| 3274129 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.50 | 36.0 | 2.57e-01 | 83.3% | 21.4% |