←Back to structures
NC_055754.1__YP_010096953.1__KNT98_gp76__00076
Bact-VirNC_055754.1__YP_010096953.1__KNT98_gp76__00076
Identity
- Accession:
- NC_055754 ↗
- Kingdom:
- phage
Quality
74.2
mean pLDDT
Taxonomy
TaxID: 2250320
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 32-99
Domain cluster:
rep: MH153804.1__AWN03656.1__PBI_JACE_36__00036__D46-104
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4v19I01 | 3.40.5.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain | 0.59 | 35.0 | 3.80e-01 | 98.5% | 70.2% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.58 | 41.0 | 3.75e-01 | 100.0% | 55.4% |
| 3n5lA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.57 | 43.0 | 3.52e-01 | 85.3% | 95.6% |
| 2hvfA00 | 3.40.5.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain | 0.56 | 34.0 | 3.68e-01 | 100.0% | 76.9% |
| 7vufD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 44.0 | 3.23e-01 | 92.6% | 67.5% |
| 4q0yA00 | 2.60.40.4400 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 40.0 | 3.29e-01 | 82.4% | 79.4% |
| 2w42B02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.52 | 36.0 | 2.56e-01 | 73.5% | 84.4% |
| 3rgzA02 | 3.30.1490.310 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.51 | 36.0 | 3.76e-01 | 100.0% | 82.0% |
| 3up9A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 36.0 | 2.95e-01 | 75.0% | 94.9% |
| 8fefH01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 44.0 | 2.89e-01 | 95.6% | 54.4% |
| 7kfuC02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.50 | 35.0 | 2.44e-01 | 73.5% | 60.1% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3950995 | 3380.1.1.0 ↗ | a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 | 0.75 | 67.0 | 6.19e-01 | 98.5% | 83.5% |
| 3264069 | 822.1.1.2 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 | 0.64 | 41.0 | 4.39e-01 | 100.0% | 75.0% |
| 3725359 | 109.4.1.1939 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ECM29_N, HEAT_ECM29 | 0.61 | 50.0 | 2.73e-01 | 88.2% | 11.9% |
| 4560015 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.57 | 30.0 | 2.94e-01 | 70.6% | 42.7% |
| 4147528 | 4.1.1.307 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26132 | 0.54 | 47.0 | 4.70e-01 | 98.5% | 100.0% |
| 3199995 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 41.0 | 4.10e-01 | 86.8% | 100.0% |
| 3923009 | 3241.1.1.1 ↗ | alpha arrays › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › GPP34 | 0.52 | 42.0 | 2.92e-01 | 91.2% | 75.9% |
| 3339376 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.52 | 35.0 | 3.07e-01 | 100.0% | 42.6% |
| 3611337 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.50 | 41.0 | 3.25e-01 | 89.7% | 80.0% |