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NC_055757.1__YP_010097228.1__KNU01_gp094__00094
Bact-VirNC_055757.1__YP_010097228.1__KNU01_gp094__00094
Identity
- Accession:
- NC_055757 ↗
- Kingdom:
- phage
Quality
85.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Krischvirus›
Escherichia_virus_KFS-EC
TaxID: 2250214
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-62
Domain cluster:
representative
CATH (50)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d6wB01 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.73 | 57.0 | 5.48e-01 | 96.6% | 74.3% |
| 1p9rA01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.67 | 56.0 | 4.67e-01 | 98.3% | 75.7% |
| 2hiyA02 | 3.30.70.1260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › bacterial protein sp0830 like | 0.64 | 44.0 | 3.90e-01 | 100.0% | 47.8% |
| 5cwaA00 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.64 | 56.0 | 3.28e-01 | 100.0% | 17.8% |
| 7qu9A01 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.64 | 55.0 | 3.32e-01 | 100.0% | 23.5% |
| 3wxmB02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.63 | 52.0 | 4.20e-01 | 94.9% | 96.7% |
| 2gzaA01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.62 | 52.0 | 4.37e-01 | 98.3% | 78.7% |
| 1yj7B01 | 3.30.70.1530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 | 0.62 | 42.0 | 3.97e-01 | 100.0% | 59.2% |
| 1k0eB00 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.61 | 53.0 | 3.21e-01 | 100.0% | 26.1% |
| 3l09A03 | 3.30.70.2670 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 36.0 | 3.98e-01 | 93.2% | 74.5% |
| 1ijqA01 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.60 | 51.0 | 3.36e-01 | 96.6% | 99.6% |
| 1nf2A02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.58 | 51.0 | 4.20e-01 | 98.3% | 100.0% |
| 3ezjA02 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.58 | 41.0 | 4.02e-01 | 98.3% | 67.6% |
| 3da7E00 | 3.40.20.20 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › | 0.58 | 45.0 | 3.90e-01 | 89.8% | 78.6% |
| 1zhvA00 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.58 | 44.0 | 3.51e-01 | 86.4% | 96.3% |
| 1nrwA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.58 | 49.0 | 3.85e-01 | 98.3% | 100.0% |
| 2gumB03 | 2.30.29.100 | Mainly Beta › Roll › PH-domain like › | 0.58 | 46.0 | 3.87e-01 | 98.3% | 93.4% |
| 3pgvA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.57 | 49.0 | 4.16e-01 | 98.3% | 100.0% |
| 2b30A02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.57 | 49.0 | 4.06e-01 | 98.3% | 99.1% |
| 7xhzA01 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.57 | 47.0 | 3.77e-01 | 94.9% | 95.9% |
| 1vpkA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.56 | 45.0 | 3.69e-01 | 91.5% | 76.7% |
| 3r4cA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.56 | 48.0 | 4.08e-01 | 98.3% | 100.0% |
| 7e6gA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.56 | 50.0 | 3.72e-01 | 100.0% | 45.6% |
| 5suvC00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.55 | 46.0 | 3.70e-01 | 96.6% | 100.0% |
| 1vw4F02 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.55 | 46.0 | 3.93e-01 | 98.3% | 58.7% |
| 4ofzA03 | 3.30.70.3080 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 49.0 | 4.25e-01 | 100.0% | 97.8% |
| 3cjnA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 41.0 | 3.25e-01 | 96.6% | 35.6% |
| 8gccA02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.54 | 41.0 | 3.70e-01 | 100.0% | 58.1% |
| 3t0pA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.54 | 41.0 | 3.10e-01 | 86.4% | 50.0% |
| 6lxgA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.54 | 39.0 | 3.73e-01 | 96.6% | 64.4% |
| 2zzzA02 | 3.30.63.10 | Alpha Beta › 2-Layer Sandwich › Guanylate Kinase phosphate binding domain › Guanylate Kinase phosphate binding domain | 0.54 | 40.0 | 4.05e-01 | 93.2% | 81.7% |
| 1s2oA02 | 3.90.1070.10 | Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › | 0.54 | 47.0 | 4.49e-01 | 100.0% | 100.0% |
| 6yleA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 42.0 | 2.64e-01 | 91.5% | 89.0% |
| 3l4gC03 | 1.10.10.2330 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.54 | 37.0 | 3.86e-01 | 98.3% | 81.1% |
| 3t0pA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.54 | 40.0 | 2.78e-01 | 96.6% | 24.4% |
| 3cuqB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 44.0 | 4.07e-01 | 100.0% | 70.0% |
| 5xuhA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.52 | 42.0 | 3.51e-01 | 100.0% | 100.0% |
| 7cr6D01 | 3.100.10.20 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain | 0.52 | 43.0 | 3.96e-01 | 98.3% | 75.6% |
| 1k32A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 42.0 | 2.70e-01 | 94.9% | 94.0% |
| 4q5eA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 41.0 | 3.89e-01 | 100.0% | 72.0% |
| 5a48B00 | 3.30.420.610 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like | 0.52 | 43.0 | 3.73e-01 | 100.0% | 58.3% |
| 4trtA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.52 | 41.0 | 3.39e-01 | 93.2% | 71.3% |
| 3fqmA01 | 2.20.25.210 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B | 0.52 | 41.0 | 4.13e-01 | 94.9% | 82.0% |
| 5w7zA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.51 | 40.0 | 3.40e-01 | 93.2% | 76.1% |
| 2amyA02 | 3.30.1240.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › Eukaryotic phosphomannomutase, cap domain | 0.51 | 44.0 | 3.71e-01 | 98.3% | 97.1% |
| 2lh9A00 | 3.30.420.610 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like | 0.51 | 44.0 | 4.03e-01 | 100.0% | 76.9% |
| 2nn6G03 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.50 | 36.0 | 3.30e-01 | 100.0% | 54.5% |
| 2xubA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 37.0 | 3.50e-01 | 98.3% | 64.1% |
| 2wasA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.50 | 42.0 | 3.54e-01 | 100.0% | 99.1% |
| 5yhgA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.50 | 43.0 | 2.79e-01 | 98.3% | 89.0% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4221307 | 880.1.1.1 ↗ | a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind | 0.74 | 65.0 | 3.85e-01 | 100.0% | 22.7% |
| 1713365 | 223.1.1.51 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › MCP-like_PDC_1 | 0.68 | 60.0 | 4.34e-01 | 100.0% | 77.6% |
| 4927276 | 880.1.1.1 ↗ | a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind | 0.67 | 59.0 | 3.51e-01 | 100.0% | 23.4% |
| 81577 | 880.1.1.1 ↗ | a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind | 0.65 | 57.0 | 3.42e-01 | 100.0% | 24.7% |
| 3307519 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.65 | 57.0 | 5.41e-01 | 98.3% | 94.3% |
| 3311773 | 880.1.1.1 ↗ | a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind | 0.65 | 56.0 | 3.35e-01 | 100.0% | 24.5% |
| 1281472 | 304.155.1.2 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in putative transcriptional regulator Jann_0659-related proteins › Ferredoxin-like domain in putative transcriptional regulator Jann_0659-related proteins › PaaX-like_Fer-like | 0.62 | 39.0 | 3.94e-01 | 98.3% | 61.7% |
| 3531756 | 5.1.3.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b | 0.62 | 53.0 | 3.48e-01 | 96.6% | 98.5% |
| 3737085 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.59 | 45.0 | 3.14e-01 | 83.1% | 63.7% |
| 4002676 | 5.1.3.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b | 0.59 | 49.0 | 3.29e-01 | 94.9% | 99.6% |
| 309454 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.58 | 43.0 | 3.45e-01 | 81.4% | 73.5% |
| 4073610 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.58 | 49.0 | 3.97e-01 | 94.9% | 96.5% |
| 4119533 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.58 | 40.0 | 4.07e-01 | 93.2% | 73.3% |
| 5012847 | 2003.1.5.79 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 | 0.57 | 51.0 | 3.43e-01 | 100.0% | 28.8% |
| 3099741 | 101.1.2.47 ↗ | alpha arrays › HTH › HTH › winged helix domain › S10_plectin | 0.57 | 48.0 | 4.12e-01 | 98.3% | 57.6% |
| 4066623 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.57 | 39.0 | 3.98e-01 | 93.2% | 73.3% |
| 3928213 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 48.0 | 3.94e-01 | 98.3% | 55.7% |
| 5008249 | 304.131.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phosphonoacetate hydrolase insertion domain › Phosphonoacetate hydrolase insertion domain | 0.56 | 50.0 | 3.81e-01 | 100.0% | 91.9% |
| 5028247 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.55 | 48.0 | 3.29e-01 | 100.0% | 82.7% |
| 5079208 | 7584.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding | 0.55 | 38.0 | 2.60e-01 | 74.6% | 48.2% |
| 3729359 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 44.0 | 3.88e-01 | 100.0% | 60.0% |
| 3393239 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.54 | 45.0 | 2.99e-01 | 96.6% | 95.3% |
| 4186551 | 301.8.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS | 0.54 | 45.0 | 3.63e-01 | 98.3% | 100.0% |
| 4298574 | 3019.1.1.1 ↗ | beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Flagellin_IN | 0.54 | 44.0 | 3.88e-01 | 100.0% | 75.0% |
| 3252775 | 3696.1.1.0 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related | 0.53 | 42.0 | 4.05e-01 | 91.5% | 100.0% |
| 4527505 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.53 | 45.0 | 2.76e-01 | 100.0% | 84.0% |
| 4970782 | 2484.7.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Uncharacterized protein PF2046 › Uncharacterized protein PF2046 › DUF4152 | 0.53 | 41.0 | 2.93e-01 | 93.2% | 60.4% |
| 3985978 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 42.0 | 3.71e-01 | 89.8% | 84.4% |
| 5026711 | 2484.7.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Uncharacterized protein PF2046 › Uncharacterized protein PF2046 › DUF4152 | 0.52 | 39.0 | 2.78e-01 | 86.4% | 75.6% |
| 4234515 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.52 | 41.0 | 3.44e-01 | 93.2% | 76.7% |
| 3739571 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.52 | 41.0 | 3.96e-01 | 96.6% | 75.7% |
| 4047098 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.52 | 41.0 | 3.40e-01 | 93.2% | 75.8% |
| 3932751 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.51 | 41.0 | 3.25e-01 | 98.3% | 40.8% |
| 4967335 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.51 | 41.0 | 3.66e-01 | 100.0% | 62.4% |
| 4081334 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.51 | 43.0 | 3.09e-01 | 100.0% | 89.9% |
| 5020647 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.50 | 42.0 | 3.38e-01 | 100.0% | 49.2% |