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NC_055758.1__YP_010097481.1__KNU02_gp87__00087

Bact-Vir

NC_055758.1__YP_010097481.1__KNU02_gp87__00087

Identity

Accession:
NC_055758 ↗
Kingdom:
phage

Quality

92.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zierdtviridae› Pleakleyvirus› Gordonia_phage_Pleakley

TaxID: 2283246

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-137
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gwrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 33.0 3.44e-01 71.9% 65.4%
3bb9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 33.0 3.42e-01 71.9% 68.0%
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 30.0 3.14e-01 71.1% 63.3%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 30.0 2.77e-01 71.1% 43.2%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3517477 2484.1.1.230 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27073 0.67 41.0 4.61e-01 88.9% 78.1%
3651732 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.61 38.0 3.05e-01 88.9% 30.4%
3676745 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.59 41.0 4.14e-01 98.5% 69.3%
4946199 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.55 29.0 3.60e-01 93.3% 86.7%
3301049 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.55 37.0 3.86e-01 100.0% 75.0%
4623792 243.1.1.34 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › YchJ_M-like 0.55 31.0 3.25e-01 73.3% 56.8%
3784232 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.54 39.0 3.86e-01 75.6% 80.7%
3239720 2484.1.1.50 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT 0.52 46.0 3.10e-01 97.8% 24.7%
3413200 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 44.0 3.08e-01 100.0% 28.4%
3939338 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 47.0 4.15e-01 100.0% 73.3%
3531937 2484.1.1.317 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF28925 0.51 44.0 2.98e-01 99.3% 24.9%
3246974 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.50 31.0 3.51e-01 70.4% 82.0%
3938534 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 45.0 3.49e-01 100.0% 45.5%
3517882 2484.1.1.215 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27041 0.50 42.0 2.97e-01 99.3% 28.6%