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NC_055761.1__YP_010097816.1__KNU05_gp113__00113

Bact-Vir

NC_055761.1__YP_010097816.1__KNU05_gp113__00113

Identity

Accession:
NC_055761 ↗
Kingdom:
phage

Quality

70.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Makelovirus› Synechococcus_virus_S-PRM1

TaxID: 2100130

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 199-327
PDB
Domain cluster: rep: KJ803031.1__AID16847.1__vBDshPR2C_32__00032__D58-159
D2 medium residues 653-711
PDB
Domain cluster: rep: OP053362.1__UYE97273.1__X__00108__D357-406
D3 medium residues 712-768
PDB
D4 medium residues 1229-1282
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4i5sA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 44.0 3.77e-01 81.5% 83.7%
7r5mA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.58 40.0 2.71e-01 74.1% 74.0%
2oseA00 2.40.100.10 Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like 0.58 44.0 3.22e-01 94.4% 94.9%
1ks9A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 38.0 2.77e-01 74.1% 50.3%
3e23A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 42.0 2.93e-01 88.9% 36.4%
1s55A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 3.39e-01 100.0% 69.2%
4i0kA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 3.48e-01 85.2% 85.3%
2zkmX04 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.54 41.0 3.32e-01 92.6% 98.5%
4xfjA02 3.90.1260.10 Alpha Beta › Alpha-Beta Complex › Argininosuccinate synthetase, chain A, domain 2 › Argininosuccinate synthetase, chain A, domain 2 0.53 37.0 2.68e-01 75.9% 51.9%
3pquA01 2.40.128.250 Mainly Beta › Beta Barrel › Lipocalin › 0.53 41.0 3.40e-01 94.4% 99.2%
4wgkA02 2.60.40.2300 Mainly Beta › Sandwich › Immunoglobulin-like › Neutral/alkaline non-lysosomal ceramidase, C-terminal domain 0.53 39.0 3.18e-01 90.7% 82.0%
3es1A01 2.20.70.150 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.52 32.0 3.55e-01 94.4% 89.2%
1vlpA00 3.20.140.10 Alpha Beta › Alpha-Beta Barrel › nicotinate phosphoribosyltransferase › nicotinate phosphoribosyltransferase 0.51 36.0 2.26e-01 81.5% 19.1%
3nkgA00 2.60.120.790 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.01e-01 94.4% 84.7%
3sm3A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 39.0 2.70e-01 88.9% 45.8%
8a57D02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 36.0 2.63e-01 81.5% 30.4%
3u83A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 36.0 3.16e-01 85.2% 87.1%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.50 42.0 3.01e-01 92.6% 82.4%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3648966 11.1.1.47 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_48 0.64 45.0 3.39e-01 74.1% 72.3%
4287081 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.59 46.0 3.57e-01 87.0% 55.2%
4934212 328.1.1.1 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.58 47.0 4.01e-01 94.4% 68.4%
5049353 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.56 41.0 3.21e-01 81.5% 56.0%
3950094 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.55 45.0 2.87e-01 94.4% 63.9%
4636411 323.1.1.1 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › 2-oxoacid_dh 0.54 44.0 2.90e-01 94.4% 75.9%
3473279 2003.1.5.102 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DUF4471 0.54 42.0 2.69e-01 85.2% 35.2%
3276759 3529.1.1.6 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Band_7 0.54 40.0 3.70e-01 79.6% 87.1%
4997598 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.54 43.0 3.43e-01 88.9% 47.8%
3477928 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 42.0 3.29e-01 94.4% 69.0%
3445188 2484.1.1.26 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi 0.53 40.0 2.80e-01 83.3% 25.6%
4086239 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 43.0 4.31e-01 100.0% 96.4%
3338445 11.1.1.223 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ceramidse_alk_C 0.50 39.0 3.00e-01 98.1% 99.4%