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NC_055761.1__YP_010097818.1__KNU05_gp115__00115

Bact-Vir

NC_055761.1__YP_010097818.1__KNU05_gp115__00115

Identity

Accession:
NC_055761 ↗
Kingdom:
phage

Quality

93.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Makelovirus› Synechococcus_virus_S-PRM1

TaxID: 2100130

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-205
PDB
Domain cluster: rep: BML_08012017_9_75m_scaffold_2_prodigal-single.1__X__X__00265__D3-162
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05996.18 best Fe_bilin_red 53.8 3.10e-14 93.9% 85.5%
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vckA00 3.40.1500.20 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › 0.98 97.0 9.49e-01 100.0% 96.2%
2x9oA00 3.40.1500.20 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › 0.88 85.0 7.96e-01 100.0% 96.1%
2g18I00 3.40.1500.20 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › 0.86 82.0 7.64e-01 100.0% 93.7%
2zxkA00 3.40.1500.20 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › 0.81 77.0 6.86e-01 100.0% 92.9%
2g30A02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.64 26.0 3.40e-01 72.7% 63.8%
4bboA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.60 32.0 4.20e-01 71.2% 92.0%
4frxA01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.58 43.0 3.41e-01 76.3% 48.5%
3sy9C01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.58 42.0 3.42e-01 74.7% 58.6%
1pzdA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.57 26.0 3.34e-01 73.7% 72.2%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 26.0 3.37e-01 75.8% 73.3%
1hn0A03 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 40.0 3.53e-01 71.2% 95.0%
3sybA00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.56 42.0 3.31e-01 78.3% 83.3%
5tgnA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 24.0 3.17e-01 83.8% 71.6%
3ecfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 28.0 3.48e-01 76.8% 75.8%
1fw3A00 2.40.230.10 Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Phospholipase A1 0.55 41.0 3.79e-01 76.3% 92.0%
3dxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 25.0 3.16e-01 100.0% 70.1%
2vt8A00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.53 33.0 3.78e-01 74.2% 83.2%
2leqA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 32.0 3.67e-01 72.2% 80.1%
3rd6A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 32.0 3.71e-01 72.2% 81.9%
5f7uA02 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.51 39.0 3.74e-01 78.3% 86.3%
3a57A00 2.60.270.30 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Vibrio parahaemolyticus thermostable direct hemolysin 0.51 33.0 3.74e-01 97.5% 83.8%
3otlA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 32.0 3.57e-01 73.2% 79.1%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.51 33.0 3.74e-01 78.3% 85.3%
4fqeA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.51 36.0 3.83e-01 71.2% 95.9%
7wa9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 32.0 3.74e-01 71.2% 87.9%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 32.0 3.59e-01 73.2% 81.5%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
346609 867.1.1.2 ↗ a+b three layers › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Fe_bilin_red 0.98 96.0 9.34e-01 100.0% 95.3%
4194577 867.1.1.2 ↗ a+b three layers › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Fe_bilin_red 0.87 84.0 7.62e-01 100.0% 92.9%
312112 867.1.1.2 ↗ a+b three layers › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Fe_bilin_red 0.86 83.0 7.55e-01 100.0% 89.9%
4071946 867.1.1.2 ↗ a+b three layers › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Fe_bilin_red 0.86 82.0 7.63e-01 100.0% 92.5%
4078410 867.1.1.2 ↗ a+b three layers › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Fe_bilin_red 0.86 82.0 7.62e-01 100.0% 92.9%
3015419 867.1.1.2 ↗ a+b three layers › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Fe_bilin_red 0.86 82.0 7.54e-01 100.0% 91.4%
362804 867.1.1.3 ↗ a+b three layers › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › RCC_reductase 0.80 75.0 6.68e-01 100.0% 90.9%
3333497 867.1.1.2 ↗ a+b three layers › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Fe_bilin_red 0.78 70.0 6.47e-01 100.0% 76.7%
3453399 867.1.1.3 ↗ a+b three layers › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › RCC_reductase 0.70 63.0 6.10e-01 93.4% 97.2%
3235233 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.61 43.0 3.45e-01 71.2% 60.3%
5003221 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.61 35.0 4.46e-01 76.3% 96.5%
3983528 5084.3.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta 0.60 42.0 3.92e-01 71.2% 78.2%
2321076 5084.5.1.11 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 0.59 41.0 3.46e-01 70.7% 91.8%
4880357 5084.8.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.58 36.0 4.30e-01 84.8% 91.0%
3725709 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 29.0 3.81e-01 97.5% 86.4%
4009646 5084.3.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta 0.57 43.0 3.80e-01 78.3% 81.4%
3616310 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.57 44.0 3.42e-01 79.3% 80.2%
3809272 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.57 40.0 3.56e-01 72.2% 96.6%
3807906 331.3.1.43 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C 0.55 39.0 3.85e-01 71.7% 67.0%
3273993 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.54 38.0 3.50e-01 71.2% 89.0%
1954605 11.1.3.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Cu,Zn superoxide dismutase-like › Sod_Cu 0.52 29.0 3.64e-01 73.2% 91.2%
4196609 3692.1.1.0 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.51 30.0 3.78e-01 76.3% 94.2%
3425526 897.1.1.1 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.50 33.0 3.49e-01 87.4% 72.1%