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NC_055761.1__YP_010097837.1__KNU05_gp134__00134

Bact-Vir

NC_055761.1__YP_010097837.1__KNU05_gp134__00134

Identity

Accession:
NC_055761 ↗
Kingdom:
phage

Quality

95.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Makelovirus› Synechococcus_virus_S-PRM1

TaxID: 2100130

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-81
PDB
Domain cluster: rep: MN718199.1__QGZ16104.1__Kuja_1130__00113__D7-92
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08993.16 best T4_Gp59_N 51.2 2.00e-13 97.4% 71.0%
D2 high residues 99-196
PDB
Domain cluster: rep: NC_015251.1__YP_004300892.1__ST65p053__00054__D54-144
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08994.16 best T4_Gp59_C 40.1 7.00e-10 98.0% 85.3%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1c1kA02 1.10.220.50 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Bacteriophage T4, Gp59, helicase assembly protein, C-terminal domain 0.94 90.0 8.40e-01 100.0% 93.9%
4yozA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.63 47.0 3.88e-01 79.6% 73.3%
2qzcA00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.59 45.0 3.56e-01 81.6% 83.7%
2ycdA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 45.0 4.27e-01 83.7% 95.7%
3kp9A01 1.20.1440.130 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › VKOR domain 0.58 41.0 3.52e-01 73.5% 72.2%
2b6cA01 1.20.1660.10 Mainly Alpha › Up-down Bundle › ARM repeat fold › Hypothetical protein (EF3068) 0.58 42.0 4.03e-01 78.6% 65.5%
1x3kA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 38.0 3.36e-01 70.4% 71.4%
1wnvB00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.55 43.0 3.45e-01 86.7% 80.5%
4uiqB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 38.0 3.35e-01 74.5% 69.9%
2wy4A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 37.0 3.37e-01 71.4% 74.1%
5je8B02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.52 48.0 4.36e-01 100.0% 88.3%
2qytA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.52 35.0 3.50e-01 100.0% 66.3%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4841 546.1.1.1 ↗ alpha complex topology › gene 59 helicase assembly protein › gene 59 helicase assembly protein › gene 59 helicase assembly protein 0.94 90.0 6.70e-01 100.0% 48.8%
4048976 5000.4.1.1 ↗ alpha arrays › Toxins' membrane translocation domains › delta-Endotoxin (insectocide), N-terminal domain › delta-Endotoxin (insectocide), N-terminal domain › Endotoxin_N 0.57 44.0 3.30e-01 85.7% 55.0%
3741785 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.54 30.0 3.03e-01 87.8% 52.0%
4996029 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 40.0 2.87e-01 88.8% 46.5%