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NC_055762.1__YP_010097951.1__KNU06_gp58__00058

Bact-Vir

NC_055762.1__YP_010097951.1__KNU06_gp58__00058

Identity

Accession:
NC_055762 ↗
Kingdom:
phage

Quality

82.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stackebrandtviridae› Vividuovirus› Gordonia_phage_Angelicage

TaxID: 2301695

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-71
PDB
Domain cluster: rep: NC_024138.1__YP_009031538.1__FH33_gp028__00028__D40-95
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6hq7B02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.63 46.0 3.10e-01 77.9% 28.1%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 46.0 4.02e-01 82.4% 84.3%
1z8gA01 3.10.250.10 Alpha Beta › Roll › Mac-2 Binding Protein › SRCR-like domain 0.61 42.0 3.71e-01 73.5% 99.0%
3ce2A02 1.10.287.830 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › putative peptidase helix hairpin domain like 0.59 33.0 3.92e-01 77.9% 80.9%
2qr4A02 1.10.287.830 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › putative peptidase helix hairpin domain like 0.59 33.0 3.89e-01 77.9% 80.9%
1nstA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 50.0 3.31e-01 98.5% 89.0%
1zs7A01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.53 41.0 3.72e-01 89.7% 79.8%
3e8oB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 42.0 3.75e-01 89.7% 82.0%
3ho6B00 3.40.50.11050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain 0.52 40.0 2.86e-01 89.7% 71.7%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.51 39.0 2.96e-01 86.8% 73.2%
3qeeB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 41.0 2.75e-01 92.6% 46.2%
4a2lF02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 2.82e-01 98.5% 35.7%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5047885 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.79 49.0 5.90e-01 91.2% 95.6%
3846875 376.1.4.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR_1 0.76 46.0 4.78e-01 70.6% 64.6%
5073026 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 49.0 5.66e-01 89.7% 100.0%
3274032 375.1.1.211 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ima1_N 0.69 43.0 5.11e-01 72.1% 95.6%
3683602 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 52.0 5.11e-01 94.1% 100.0%
3405158 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 42.0 4.08e-01 92.6% 64.0%
5062120 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 41.0 3.58e-01 70.6% 100.0%
3887402 386.1.1.71 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 0.58 40.0 4.27e-01 94.1% 83.3%
5001324 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 47.0 4.11e-01 91.2% 89.5%
3860558 604.38.1.1 ↗ alpha bundles › Spectrin repeat-like › Legionella effector SdeA 3-helical bundle › Legionella effector SdeA 3-helical bundle › CCDC84 0.57 39.0 3.66e-01 91.2% 57.6%
3333548 2002.1.1.8 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Cellulase 0.52 38.0 2.42e-01 77.9% 53.8%
3619159 292.2.1.5 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Polo_box_3 0.52 36.0 3.29e-01 73.5% 53.7%
3772995 304.166.1.9 ↗ a+b two layers › Alpha-beta plaits › Nup54 ferredoxin-like domain › Nup54 ferredoxin-like domain › PF29949 0.51 37.0 3.13e-01 79.4% 56.0%
4966163 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 36.0 3.52e-01 76.5% 85.3%
D2 high residues 75-122
PDB
Domain cluster: rep: NC_055920.1__YP_010114983.1__KNV78_gp64__00064__D6-51