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NC_055769.1__YP_010098776.1__KNU13_gp76__00076

Bact-Vir

Identity

Accession:: NC_055769 ↗
Kingdom:: phage

Quality

66.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zierdtviridae› Gruunavirus› Gordonia_phage_Turuncu

TaxID: 2315610

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 51-147

PDB

Domain cluster: rep: OQ938576.1__WIC88923.1__SEA_SHAGRAT_54__00054__D9-84

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02467.22 best	Whib	35.9	1.20e-08	87.6%	89.2%

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2x19B00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.66	56.0	3.23e-01	92.8%	14.7%
7w5gA01	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.58	45.0	3.04e-01	82.5%	31.0%
1h5zA00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.56	43.0	2.80e-01	79.4%	78.1%
1yz5B00	1.20.190.20	Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain	0.56	49.0	3.76e-01	99.0%	72.5%
2h7oA02	1.20.58.1230	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rac1-binding domain, C-terminal subdomain	0.55	41.0	3.61e-01	78.4%	70.1%
5dkoA02	1.10.3900.10	Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like	0.55	43.0	3.65e-01	84.5%	90.4%
2oezA02	1.10.3900.10	Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like	0.54	42.0	3.60e-01	84.5%	90.2%
7dwqL01	1.20.1240.10	Mainly Alpha › Up-down Bundle › Photosystem 1 Reaction Centre Subunit Xi; Chain: L; › Photosystem I PsaL, reaction centre subunit XI	0.54	37.0	3.46e-01	72.2%	88.8%
3di5A00	1.20.120.450	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain	0.54	36.0	3.22e-01	77.3%	45.6%
3swhA01	1.10.357.50	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 ›	0.53	40.0	3.38e-01	80.4%	49.1%
4ppuA00	1.10.590.10	Mainly Alpha › Orthogonal Bundle › Chorismate Mutase, subunit A › Chorismate mutase, AroQ class superfamily, eukaryotic	0.53	40.0	3.03e-01	81.4%	51.8%
3cf6E03	1.20.870.10	Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1	0.53	40.0	3.73e-01	84.5%	81.7%
1htjF00	1.10.167.10	Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2	0.51	38.0	3.17e-01	79.4%	85.7%
1rx0A03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.51	37.0	3.18e-01	76.3%	67.1%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3951668	1022.2.1.1 ↗	alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 › Whib	0.82	59.0	6.68e-01	94.8%	98.6%
3954362	1022.2.1.1 ↗	alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 › Whib	0.76	68.0	6.55e-01	96.9%	90.0%
4109554	109.4.1.3338 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1, Importin_rep, Importin_rep_2, Importin_rep_3, TPR_TNPO3_IPO13_2nd, TPR_TNPO3_IPO13_4th, TPR_TNPO3_IPO13_3rd	0.64	56.0	3.21e-01	96.9%	14.1%
3812109	109.3.1.181 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Serinc	0.56	42.0	3.34e-01	82.5%	67.4%
3787080	109.4.1.17 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin	0.55	47.0	4.66e-01	95.9%	93.3%
3990091	601.18.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3	0.55	38.0	4.14e-01	79.4%	86.3%
4963477	3352.1.1.0 ↗	alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain	0.54	47.0	3.19e-01	99.0%	28.1%
4446401	7015.1.1.0 ↗	alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain	0.54	39.0	3.43e-01	76.3%	67.6%
3538398	601.19.1.24 ↗	alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › CCDC127	0.52	42.0	4.09e-01	87.6%	79.1%
3219944	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.51	42.0	3.33e-01	92.8%	41.4%
3933404	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.51	39.0	3.40e-01	81.4%	92.0%