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NC_055772.1__YP_010099074.1__KNU16_gp48__00091

Bact-Vir

NC_055772.1__YP_010099074.1__KNU16_gp48__00091

Identity

Accession:
NC_055772 ↗
Kingdom:
phage

Quality

94.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zierdtviridae› Ceetrepovirus› Corynebacterium_phage_Kimchi1738

TaxID: 2483719

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-92
PDB
Domain cluster: rep: MG198776.1__ATW58502.1__SEA_C3PO_94__00090__D3-78
D2 high residues 111-214
PDB
Domain cluster: rep: MW584153.1__QSM01877.1__PROPHIGD79-1_90__00090__D11-110
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24239.2 best DUF7447 56.6 3.60e-15 76.9% 81.4%
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ecfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 44.0 4.16e-01 73.1% 85.9%
8gq6A01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.61 47.0 3.41e-01 81.7% 33.7%
2g30A02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.61 40.0 3.87e-01 82.7% 59.5%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.60 41.0 3.34e-01 71.2% 87.6%
3iujA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.60 47.0 3.37e-01 86.5% 37.3%
2mj7A00 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.59 39.0 3.56e-01 82.7% 50.4%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 41.0 3.98e-01 72.1% 88.6%
7fisA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 47.0 3.41e-01 87.5% 49.8%
5zc1D00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 46.0 4.79e-01 85.6% 98.0%
5hp6A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 43.0 3.05e-01 80.8% 44.2%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.57 46.0 4.19e-01 87.5% 95.6%
2av5A00 3.30.70.3250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribonuclease P, Pop5 subunit 0.57 48.0 4.83e-01 93.3% 92.5%
7dmdA01 3.15.10.20 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Activator of Hsp90 ATPase Aha1, N-terminal domain 0.57 40.0 3.70e-01 73.1% 72.0%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.57 38.0 4.02e-01 80.8% 78.7%
2gxfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 39.0 3.74e-01 71.2% 99.2%
4esqA00 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.56 49.0 4.06e-01 100.0% 93.3%
4fpwB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 43.0 3.74e-01 82.7% 68.9%
1d1jB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.55 49.0 4.53e-01 100.0% 94.9%
4i8oA01 3.30.310.240 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain 0.55 37.0 3.97e-01 82.7% 82.0%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 38.0 3.57e-01 100.0% 60.6%
4hwmA00 2.40.128.500 Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein 0.53 46.0 4.48e-01 95.2% 99.1%
3v3sA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 46.0 3.52e-01 100.0% 94.1%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.53 40.0 3.65e-01 81.7% 77.4%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.53 46.0 4.47e-01 100.0% 83.9%
6izcA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 46.0 3.53e-01 100.0% 96.2%
4kc5C03 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.53 47.0 3.41e-01 100.0% 76.5%
1e5pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 40.0 3.53e-01 79.8% 93.3%
4qwoB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 46.0 4.33e-01 100.0% 97.0%
4g59B00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.52 36.0 3.14e-01 72.1% 74.8%
3oh8A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 39.0 3.58e-01 81.7% 78.6%
5hw3A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 45.0 3.37e-01 100.0% 90.3%
5fmgA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.50 41.0 3.28e-01 90.4% 68.5%
6jb7A01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.50 38.0 3.36e-01 80.8% 56.1%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3954708 4325.1.1.9 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › PF26003 0.75 37.0 5.12e-01 87.5% 100.0%
3572892 5.1.4.13 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP 0.63 52.0 3.38e-01 90.4% 45.7%
3577495 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 48.0 3.79e-01 81.7% 62.3%
3947188 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.62 44.0 4.40e-01 73.1% 86.7%
4929364 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.61 36.0 4.27e-01 96.2% 92.3%
5031724 331.2.1.0 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.60 39.0 4.18e-01 82.7% 75.6%
4031476 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 41.0 4.20e-01 72.1% 74.8%
5045102 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.59 40.0 4.15e-01 83.7% 73.7%
3505384 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 46.0 3.31e-01 85.6% 45.9%
3570692 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.59 41.0 3.95e-01 100.0% 64.3%
3230461 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 40.0 3.72e-01 71.2% 69.6%
3920905 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.58 39.0 3.72e-01 99.0% 58.1%
3801679 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 48.0 3.42e-01 90.4% 83.9%
3934831 5.1.2.9 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Apyrase 0.57 50.0 3.52e-01 96.2% 92.7%
3523526 220.1.1.174 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Cybc1_Eros 0.57 49.0 4.86e-01 100.0% 86.4%
3322026 4210.1.1.1 ↗ a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.56 45.0 3.97e-01 86.5% 73.5%
4029851 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.56 39.0 3.97e-01 99.0% 74.0%
3903728 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 39.0 4.03e-01 100.0% 75.0%
3710638 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.56 49.0 4.19e-01 100.0% 85.1%
4006548 331.19.1.2 ↗ a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › RnlA_toxin_N 0.56 38.0 3.92e-01 82.7% 75.8%
5001388 330.10.1.0 ↗ a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain 0.56 41.0 3.89e-01 79.8% 92.3%
5069097 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.55 40.0 3.83e-01 82.7% 65.8%
3531333 220.1.1.35 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IQ_SEC7_PH 0.55 40.0 3.44e-01 100.0% 48.5%
3281834 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.55 47.0 4.36e-01 99.0% 97.9%
3938204 7525.1.1.2 ↗ a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 0.54 41.0 2.91e-01 81.7% 93.7%
3462999 708.1.1.7 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DBD_Tnp_Mut 0.53 34.0 3.92e-01 79.8% 95.7%
3318685 284.1.3.2 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C 0.53 36.0 3.64e-01 70.2% 79.0%
3856864 223.2.1.1 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.53 46.0 4.23e-01 100.0% 87.6%
3958253 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.53 41.0 3.68e-01 82.7% 80.0%
3812869 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.52 38.0 3.91e-01 87.5% 81.0%
3282412 4312.1.1.4 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.52 46.0 4.38e-01 99.0% 90.2%
5009577 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.52 39.0 3.74e-01 81.7% 79.2%
3802306 284.1.2.0 ↗ a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases 0.51 35.0 3.68e-01 84.6% 78.9%
3418904 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.51 37.0 3.84e-01 87.5% 82.0%
4579550 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.51 39.0 3.66e-01 81.7% 90.0%
3253057 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 44.0 3.85e-01 100.0% 63.9%
3615163 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 36.0 3.60e-01 74.0% 79.4%
3940149 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.50 40.0 4.31e-01 91.3% 100.0%
3806458 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.50 38.0 3.44e-01 80.8% 91.0%