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NC_055772.1__YP_010099077.1__KNU16_gp45__00094
Bact-VirNC_055772.1__YP_010099077.1__KNU16_gp45__00094
Identity
- Accession:
- NC_055772 ↗
- Kingdom:
- phage
Quality
77.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Zierdtviridae›
Ceetrepovirus›
Corynebacterium_phage_Kimchi1738
TaxID: 2483719
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-88
Domain cluster:
representative
CATH (47)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4dbgB02 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.74 | 48.0 | 5.17e-01 | 90.4% | 78.7% |
| 1ewqB01 | 3.40.1170.10 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I | 0.64 | 42.0 | 3.59e-01 | 100.0% | 41.5% |
| 2e1vA02 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.63 | 53.0 | 3.79e-01 | 91.8% | 46.9% |
| 3ez2A01 | 1.10.1660.30 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.61 | 46.0 | 4.75e-01 | 100.0% | 88.6% |
| 6j0eB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 42.0 | 3.62e-01 | 87.7% | 44.4% |
| 3m8eA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 44.0 | 3.99e-01 | 87.7% | 55.4% |
| 4hqeA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 45.0 | 4.02e-01 | 86.3% | 58.1% |
| 2co5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 48.0 | 4.48e-01 | 91.8% | 72.8% |
| 1u5tB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 42.0 | 4.02e-01 | 76.7% | 85.9% |
| 3cuoD00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 42.0 | 3.92e-01 | 86.3% | 60.6% |
| 3cuqC01 | 1.10.10.570 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › """Winged helix"" DNA-binding domain. Chain C. Domain 1" | 0.58 | 44.0 | 4.04e-01 | 82.2% | 64.3% |
| 2fbhA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 45.0 | 3.70e-01 | 90.4% | 46.0% |
| 5ktaA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.58 | 42.0 | 3.31e-01 | 80.8% | 46.6% |
| 3eo4D00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.58 | 42.0 | 3.42e-01 | 82.2% | 69.1% |
| 5e1wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 42.0 | 3.33e-01 | 91.8% | 35.1% |
| 2rdpA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 43.0 | 3.51e-01 | 86.3% | 42.1% |
| 1z7uB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 42.0 | 3.73e-01 | 91.8% | 52.7% |
| 4g0bA02 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.57 | 47.0 | 3.38e-01 | 91.8% | 46.2% |
| 6abqB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 46.0 | 4.12e-01 | 91.8% | 66.0% |
| 3jcmH04 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.56 | 44.0 | 4.36e-01 | 98.6% | 81.8% |
| 1lxjA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 44.0 | 3.93e-01 | 100.0% | 61.2% |
| 1s7hA02 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 44.0 | 4.26e-01 | 100.0% | 76.8% |
| 1vk8A00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 43.0 | 3.99e-01 | 100.0% | 66.7% |
| 1rkiA01 | 3.30.70.1650 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › PDO, CxxC motif | 0.55 | 41.0 | 3.80e-01 | 100.0% | 61.9% |
| 2d4zA00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.55 | 48.0 | 3.72e-01 | 100.0% | 53.8% |
| 2iboA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 43.0 | 4.09e-01 | 100.0% | 70.8% |
| 2ef7A00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.55 | 39.0 | 3.33e-01 | 100.0% | 44.4% |
| 1yj7B01 | 3.30.70.1530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 | 0.54 | 38.0 | 3.92e-01 | 100.0% | 77.5% |
| 3im8A02 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.54 | 41.0 | 4.14e-01 | 100.0% | 82.2% |
| 2re1A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 41.0 | 4.10e-01 | 100.0% | 82.4% |
| 2gqcA01 | 3.30.70.2080 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 36.0 | 3.92e-01 | 94.5% | 92.9% |
| 1jqgA01 | 3.30.70.340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like | 0.53 | 39.0 | 3.65e-01 | 100.0% | 63.7% |
| 3tj8A02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.53 | 36.0 | 3.66e-01 | 100.0% | 71.6% |
| 2dt9A01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 41.0 | 4.17e-01 | 100.0% | 86.5% |
| 1ka8A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 41.0 | 3.82e-01 | 90.4% | 81.0% |
| 3tqeA02 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.52 | 39.0 | 3.99e-01 | 100.0% | 82.2% |
| 7xc2A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 41.0 | 3.65e-01 | 84.9% | 79.2% |
| 5hvqC01 | 3.90.1150.220 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.52 | 38.0 | 3.78e-01 | 83.6% | 77.5% |
| 4q6rA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 45.0 | 3.67e-01 | 94.5% | 81.7% |
| 2fyxA00 | 3.30.70.1290 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like | 0.52 | 44.0 | 3.69e-01 | 97.3% | 56.9% |
| 2pg4A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 40.0 | 3.82e-01 | 90.4% | 71.4% |
| 3c0wA02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.51 | 38.0 | 3.41e-01 | 100.0% | 56.3% |
| 2f1fA02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.51 | 37.0 | 3.63e-01 | 100.0% | 71.8% |
| 3mahA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.51 | 39.0 | 4.06e-01 | 100.0% | 91.3% |
| 1rzmA01 | 3.30.70.1140 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1 | 0.51 | 37.0 | 3.65e-01 | 98.6% | 72.5% |
| 4nxyA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 37.0 | 2.95e-01 | 82.2% | 68.2% |
| 1zj8A02 | 3.90.480.10 | Alpha Beta › Alpha-Beta Complex › Sulfite Reductase Hemoprotein; domain 2 › Sulfite Reductase Hemoprotein;Domain 2 | 0.50 | 42.0 | 3.39e-01 | 95.9% | 88.8% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5077445 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 52.0 | 4.12e-01 | 91.8% | 45.1% |
| 5049162 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.62 | 51.0 | 3.91e-01 | 91.8% | 39.4% |
| 3282985 | 101.1.2.508 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25872 | 0.62 | 45.0 | 4.37e-01 | 87.7% | 68.2% |
| 4945099 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 50.0 | 4.22e-01 | 91.8% | 56.0% |
| 4947452 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 49.0 | 3.83e-01 | 91.8% | 39.4% |
| 4388157 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.60 | 39.0 | 4.16e-01 | 94.5% | 75.4% |
| 5005519 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.60 | 48.0 | 4.22e-01 | 91.8% | 59.6% |
| 3951258 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.59 | 50.0 | 3.99e-01 | 95.9% | 47.3% |
| 5029016 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.59 | 46.0 | 3.71e-01 | 87.7% | 42.5% |
| 3282605 | 101.1.2.508 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25872 | 0.59 | 41.0 | 4.08e-01 | 90.4% | 68.8% |
| 4023459 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 44.0 | 4.28e-01 | 86.3% | 73.8% |
| 3278292 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.58 | 41.0 | 3.79e-01 | 87.7% | 56.8% |
| 3875839 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.58 | 45.0 | 3.90e-01 | 84.9% | 71.3% |
| 4940257 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.57 | 44.0 | 4.48e-01 | 100.0% | 85.7% |
| 4878879 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.57 | 46.0 | 4.17e-01 | 91.8% | 65.7% |
| 3942501 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 46.0 | 4.35e-01 | 90.4% | 80.0% |
| 3165321 | 101.1.2.280 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_12 | 0.57 | 44.0 | 4.12e-01 | 83.6% | 68.9% |
| 3676148 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.57 | 44.0 | 3.74e-01 | 86.3% | 56.0% |
| 3281997 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 44.0 | 4.06e-01 | 100.0% | 65.3% |
| 3735546 | 213.1.1.25 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 | 0.56 | 43.0 | 3.04e-01 | 83.6% | 46.7% |
| 3922669 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 48.0 | 4.30e-01 | 97.3% | 84.8% |
| 4457666 | 304.22.1.1 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C | 0.56 | 38.0 | 3.74e-01 | 100.0% | 65.0% |
| 4276586 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.56 | 40.0 | 3.43e-01 | 100.0% | 46.7% |
| 5046626 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.56 | 47.0 | 3.75e-01 | 95.9% | 51.6% |
| 3434870 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.56 | 45.0 | 4.40e-01 | 90.4% | 90.0% |
| 4965698 | 304.22.1.0 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain | 0.55 | 41.0 | 3.98e-01 | 95.9% | 72.5% |
| 3468855 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.55 | 45.0 | 3.57e-01 | 91.8% | 44.5% |
| 3666427 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.55 | 42.0 | 3.40e-01 | 86.3% | 42.6% |
| 5010793 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.55 | 41.0 | 4.13e-01 | 91.8% | 80.0% |
| 3593675 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 45.0 | 3.64e-01 | 95.9% | 73.9% |
| 3645078 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.54 | 44.0 | 3.88e-01 | 90.4% | 70.0% |
| 1107972 | 304.26.1.2 ↗ | a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Ykof | 0.54 | 44.0 | 4.01e-01 | 100.0% | 66.3% |
| 3373939 | 304.11.1.11 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › SBDS_C | 0.54 | 39.0 | 3.80e-01 | 100.0% | 70.0% |
| 4609020 | 101.1.2.642 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF3631 | 0.54 | 43.0 | 4.09e-01 | 91.8% | 85.6% |
| 3177415 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.54 | 38.0 | 3.35e-01 | 100.0% | 49.1% |
| 4122798 | 242.1.1.6 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_WhiA | 0.54 | 38.0 | 3.44e-01 | 100.0% | 52.4% |
| 3661546 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.54 | 42.0 | 3.57e-01 | 86.3% | 60.0% |
| 3272707 | 327.11.2.39 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PARP14_3 | 0.54 | 40.0 | 4.17e-01 | 100.0% | 89.2% |
| 4399101 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.54 | 43.0 | 3.81e-01 | 90.4% | 60.9% |
| 5028781 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.53 | 40.0 | 4.17e-01 | 100.0% | 92.3% |
| 4037103 | 327.16.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N | 0.53 | 40.0 | 4.25e-01 | 100.0% | 95.4% |
| 3877589 | 327.16.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system | 0.52 | 36.0 | 3.83e-01 | 94.5% | 88.3% |
| 3687319 | 101.1.2.520 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7779 | 0.52 | 40.0 | 3.88e-01 | 86.3% | 77.6% |
| 3869516 | 327.11.2.56 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF28453 | 0.51 | 40.0 | 4.16e-01 | 100.0% | 95.4% |
| 3933663 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.51 | 33.0 | 3.56e-01 | 98.6% | 81.7% |
| 3389289 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.51 | 41.0 | 2.73e-01 | 91.8% | 54.0% |
| 3734074 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.50 | 41.0 | 4.21e-01 | 95.9% | 94.3% |
| 3170512 | 242.1.1.2 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 | 0.50 | 37.0 | 3.29e-01 | 100.0% | 52.7% |
| 4218542 | 327.16.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system | 0.50 | 36.0 | 3.89e-01 | 100.0% | 95.0% |