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NC_055782.1__YP_010100431.1__KNU29_gp228__00228
Bact-VirNC_055782.1__YP_010100431.1__KNU29_gp228__00228
Identity
- Accession:
- NC_055782 ↗
- Kingdom:
- phage
Quality
86.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Dhakavirus›
Escherichia_phage_AnYang
TaxID: 2499909
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-91
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3oqpA00 | 3.40.50.850 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like | 0.58 | 47.0 | 3.47e-01 | 94.2% | 49.3% |
| 3lqyA00 | 3.40.50.850 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like | 0.58 | 46.0 | 3.41e-01 | 88.4% | 55.6% |
| 3ojoB02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 42.0 | 3.16e-01 | 81.2% | 76.2% |
| 3gzaA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.56 | 47.0 | 3.13e-01 | 100.0% | 95.3% |
| 4h08A00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.56 | 46.0 | 3.39e-01 | 94.2% | 42.5% |
| 4fk1A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 45.0 | 3.50e-01 | 100.0% | 92.5% |
| 2ckrA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 44.0 | 3.02e-01 | 100.0% | 81.0% |
| 3guvA00 | 3.40.50.1390 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Resolvase, N-terminal catalytic domain | 0.52 | 40.0 | 3.25e-01 | 88.4% | 67.8% |
| 1i24A02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.52 | 39.0 | 3.11e-01 | 81.2% | 73.2% |
| 1wohA00 | 3.40.800.10 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain | 0.51 | 41.0 | 2.75e-01 | 91.3% | 88.4% |
| 1m53A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 35.0 | 2.23e-01 | 73.9% | 24.9% |
| 1hi9A01 | 3.40.50.10780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dipeptide transport protein | 0.50 | 41.0 | 3.11e-01 | 97.1% | 95.5% |
| 5z87B02 | 3.40.50.1700 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycoside hydrolase family 3 C-terminal domain | 0.50 | 42.0 | 3.01e-01 | 98.6% | 56.5% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3802262 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.57 | 46.0 | 3.74e-01 | 91.3% | 85.0% |
| 3928786 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.56 | 43.0 | 3.12e-01 | 85.5% | 81.9% |
| 4969771 | 2007.1.11.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › L-fucose isomerase, N-terminal and second domains | 0.55 | 48.0 | 3.73e-01 | 100.0% | 98.1% |
| 4979896 | 7584.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins | 0.54 | 45.0 | 3.07e-01 | 92.8% | 54.4% |
| 4389819 | 101.1.1.8 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › TEA | 0.53 | 40.0 | 3.47e-01 | 79.7% | 99.0% |
| 5048826 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.53 | 43.0 | 3.07e-01 | 100.0% | 65.0% |
| 4978777 | 2004.1.1.120 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII | 0.52 | 36.0 | 2.59e-01 | 73.9% | 80.4% |
| 4936645 | 2007.1.8.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Uroporphyrinogen III synthase (U3S, HemD) › HEM4 | 0.52 | 46.0 | 3.68e-01 | 98.6% | 67.4% |
| 134345 | 7565.1.1.1 ↗ | a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase | 0.52 | 40.0 | 3.25e-01 | 88.4% | 67.8% |
| 3290935 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.51 | 37.0 | 2.81e-01 | 76.8% | 71.8% |
| 1520260 | 7523.1.1.4 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_3 | 0.51 | 36.0 | 3.42e-01 | 76.8% | 70.1% |
| 3242317 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.50 | 38.0 | 3.58e-01 | 81.2% | 84.7% |
| 3246385 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.50 | 39.0 | 3.13e-01 | 92.8% | 60.0% |