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NC_055788.1__YP_010101147.1__KNU46_gp23__00023

Bact-Vir

NC_055788.1__YP_010101147.1__KNU46_gp23__00023

Identity

Accession:
NC_055788 ↗
Kingdom:
phage

Quality

81.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zierdtviridae› Kablunavirus› Gordonia_phage_NosilaM

TaxID: 2507863

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 85-140
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ddqD02 1.10.274.100 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 0.52 37.0 2.76e-01 80.4% 47.2%
D2 high residues 145-320
PDB
Domain cluster: rep: NC_027377.1__YP_009151939.1__ACQ48_gp40__00040__D25-165
D3 medium residues 11-53
PDB
Domain cluster: rep: ALT_09252017_20_scaffold_43_prodigal-single.1__X__X__00006__D16-54
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.77 63.0 5.88e-01 100.0% 72.7%
1yu0A01 2.10.10.30 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.76 58.0 5.65e-01 100.0% 76.5%
3n3fA01 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.70 55.0 5.53e-01 97.7% 90.7%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.63 52.0 4.03e-01 100.0% 57.4%
4msxA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 47.0 2.91e-01 95.3% 90.1%
1wquA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 49.0 3.75e-01 100.0% 38.6%
2gnxA02 3.30.450.240 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.59 45.0 3.54e-01 93.0% 40.4%
1goiA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.58 41.0 3.35e-01 79.1% 86.7%
1e88A03 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.57 40.0 4.06e-01 88.4% 81.0%
6inxA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.57 40.0 3.62e-01 79.1% 83.1%
1ed7A00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.56 45.0 4.52e-01 100.0% 95.6%
1tpmA00 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.55 40.0 3.95e-01 88.4% 74.0%
2qmlA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 37.0 2.45e-01 72.1% 36.8%
4gc1A01 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.53 41.0 3.26e-01 93.0% 71.2%
1g8jB00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.53 41.0 3.08e-01 93.0% 41.4%
3q87A00 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.52 42.0 3.17e-01 97.7% 93.4%
4fqdB02 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.52 39.0 2.63e-01 90.7% 42.1%
4le7A02 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.52 38.0 3.26e-01 88.4% 78.0%
1x31C01 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.51 39.0 3.13e-01 93.0% 39.0%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5002640 3761.1.1.1 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N 0.97 91.0 8.55e-01 100.0% 86.0%
2905173 3761.1.1.1 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N 0.90 81.0 7.50e-01 100.0% 79.6%
1505155 3761.1.1.2 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.77 63.0 5.81e-01 100.0% 71.4%
1107990 3761.1.1.1 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N 0.76 58.0 5.68e-01 100.0% 78.0%
3917719 3761.1.1.2 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.74 59.0 5.92e-01 100.0% 88.9%
3405960 3761.1.1.2 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.72 59.0 5.91e-01 100.0% 93.0%
1281772 3761.1.1.2 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.72 58.0 5.47e-01 100.0% 74.1%
3921177 3761.1.1.0 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.71 52.0 4.89e-01 100.0% 63.6%
3498702 3761.1.1.2 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.71 61.0 6.03e-01 100.0% 95.6%
3900165 3761.1.1.2 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.71 57.0 5.77e-01 100.0% 93.0%
3528795 3761.1.1.0 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.68 51.0 5.05e-01 100.0% 82.2%
3233229 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.65 45.0 4.58e-01 86.0% 77.5%
3995227 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.64 47.0 3.81e-01 95.3% 38.9%
3769766 270.1.1.2 ↗ beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C 0.60 44.0 3.37e-01 93.0% 30.8%
3335639 6129.1.1.0 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family 0.60 46.0 3.12e-01 95.3% 21.1%
3502260 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.59 47.0 3.55e-01 100.0% 38.4%
4983462 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.59 49.0 4.32e-01 95.3% 83.1%
3956202 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.59 40.0 2.50e-01 74.4% 84.9%
4021212 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.58 43.0 2.49e-01 81.4% 71.8%
3262469 375.1.1.94 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › ZnF_RZ-type 0.57 40.0 3.91e-01 90.7% 69.4%
3505939 270.1.1.1 ↗ beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Pur_DNA_glyco 0.55 43.0 3.33e-01 93.0% 42.7%
4255854 4294.1.1.8 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › PF27112 0.54 42.0 4.06e-01 95.3% 74.0%
3843604 10.1.1.9 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY,PRY 0.53 40.0 2.79e-01 97.7% 49.5%
3606615 241.10.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.53 45.0 3.55e-01 100.0% 46.7%
3513933 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.52 41.0 3.14e-01 100.0% 36.2%
3517867 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.52 41.0 3.10e-01 100.0% 36.2%
4114145 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 43.0 3.16e-01 100.0% 61.5%
3508119 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.51 42.0 3.19e-01 100.0% 39.2%
3517650 214.1.1.10 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.51 40.0 3.25e-01 100.0% 43.0%
4945988 284.4.1.3 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_C 0.50 36.0 3.54e-01 86.0% 74.0%