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NC_055788.1__YP_010101201.1__KNU46_gp77__00077
Bact-VirNC_055788.1__YP_010101201.1__KNU46_gp77__00077
Identity
- Accession:
- NC_055788 ↗
- Kingdom:
- phage
Quality
70.7
mean pLDDT
Taxonomy
TaxID: 2507863
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 44-136
Domain cluster:
rep: ON191531.1__URG17458.1__Mbo2_088__00088__D20-99
CATH (46)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3j7aF03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 49.0 | 5.52e-01 | 79.6% | 91.5% |
| 3agjF01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.72 | 60.0 | 5.39e-01 | 90.3% | 83.5% |
| 6az1E03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 49.0 | 5.47e-01 | 79.6% | 91.7% |
| 1uirA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.71 | 38.0 | 4.91e-01 | 73.1% | 94.2% |
| 5ygbA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 49.0 | 5.19e-01 | 86.0% | 83.7% |
| 3j7yD02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 51.0 | 5.41e-01 | 91.4% | 87.7% |
| 2f5tX02 | 2.30.30.690 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 57.0 | 5.85e-01 | 89.2% | 100.0% |
| 1inlC02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.69 | 37.0 | 4.40e-01 | 73.1% | 76.6% |
| 2p4tA00 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 42.0 | 5.11e-01 | 74.2% | 100.0% |
| 3m9qA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 48.0 | 5.36e-01 | 74.2% | 95.8% |
| 1vwxA02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 50.0 | 5.38e-01 | 91.4% | 91.3% |
| 3obyA01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.68 | 56.0 | 5.33e-01 | 89.2% | 78.9% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 43.0 | 5.03e-01 | 80.6% | 100.0% |
| 1iy9A02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.65 | 35.0 | 4.52e-01 | 74.2% | 94.2% |
| 4qqgG00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 47.0 | 5.20e-01 | 81.7% | 100.0% |
| 5zr6A02 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.63 | 46.0 | 5.03e-01 | 78.5% | 100.0% |
| 7cceA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.62 | 49.0 | 4.16e-01 | 83.9% | 70.9% |
| 2o07A01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.62 | 35.0 | 4.22e-01 | 72.0% | 86.4% |
| 2gfuA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 49.0 | 4.33e-01 | 89.2% | 59.0% |
| 2hx0A01 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.61 | 50.0 | 4.49e-01 | 89.2% | 69.7% |
| 3exzB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.61 | 42.0 | 3.60e-01 | 72.0% | 98.6% |
| 3c6kA02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.60 | 34.0 | 4.05e-01 | 73.1% | 89.3% |
| 3fyfA00 | 2.40.128.410 | Mainly Beta › Beta Barrel › Lipocalin › | 0.60 | 47.0 | 4.08e-01 | 84.9% | 87.2% |
| 1w4sA00 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.60 | 44.0 | 3.88e-01 | 79.6% | 67.8% |
| 1m1fB00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 42.0 | 4.08e-01 | 74.2% | 83.8% |
| 2e5wA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.59 | 33.0 | 3.97e-01 | 76.3% | 89.3% |
| 7oc3A01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 46.0 | 4.63e-01 | 84.9% | 85.9% |
| 1ne8A00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 43.0 | 4.07e-01 | 78.5% | 81.9% |
| 1cv8A00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.57 | 45.0 | 3.82e-01 | 89.2% | 60.1% |
| 2gtlO02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.56 | 40.0 | 3.38e-01 | 76.3% | 74.8% |
| 2gtlN02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 40.0 | 3.32e-01 | 76.3% | 75.9% |
| 2arzA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 39.0 | 3.42e-01 | 76.3% | 86.0% |
| 3seeA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 44.0 | 3.50e-01 | 92.5% | 91.1% |
| 6gbuD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 36.0 | 4.13e-01 | 71.0% | 100.0% |
| 2v9kA04 | 3.30.70.3190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 37.0 | 3.60e-01 | 72.0% | 73.4% |
| 2da0A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 42.0 | 3.95e-01 | 83.9% | 87.7% |
| 2iabA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 37.0 | 3.28e-01 | 73.1% | 83.2% |
| 4ffuB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 37.0 | 3.14e-01 | 72.0% | 96.0% |
| 5flwA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.53 | 41.0 | 2.90e-01 | 84.9% | 37.1% |
| 2gtlM02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 41.0 | 3.41e-01 | 84.9% | 75.3% |
| 3fssA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 40.0 | 4.14e-01 | 84.9% | 100.0% |
| 7byjA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 39.0 | 3.93e-01 | 81.7% | 100.0% |
| 1xhnA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 35.0 | 2.93e-01 | 71.0% | 87.3% |
| 2vpaA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 35.0 | 2.82e-01 | 73.1% | 74.0% |
| 3qwmA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 40.0 | 3.65e-01 | 88.2% | 90.6% |
| 3b7fA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 39.0 | 2.63e-01 | 83.9% | 28.0% |
ECOD (54)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3959531 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.79 | 56.0 | 6.37e-01 | 82.8% | 97.1% |
| 3738626 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.74 | 62.0 | 5.25e-01 | 88.2% | 83.4% |
| 4674170 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.74 | 56.0 | 5.12e-01 | 79.6% | 63.3% |
| 3821287 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.73 | 56.0 | 4.81e-01 | 79.6% | 52.9% |
| 4272564 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.73 | 56.0 | 5.32e-01 | 79.6% | 70.4% |
| 4063634 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.72 | 54.0 | 4.90e-01 | 79.6% | 77.4% |
| 4024274 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.71 | 55.0 | 5.27e-01 | 80.6% | 71.4% |
| 5073368 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 50.0 | 5.64e-01 | 96.8% | 97.1% |
| 4982354 | 4.7.1.0 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 | 0.70 | 48.0 | 5.56e-01 | 75.3% | 100.0% |
| 5041849 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.70 | 37.0 | 4.66e-01 | 73.1% | 87.3% |
| 4671845 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.69 | 38.0 | 4.49e-01 | 75.3% | 78.5% |
| 3687023 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 48.0 | 4.75e-01 | 73.1% | 91.0% |
| 2755606 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.68 | 55.0 | 4.04e-01 | 84.9% | 43.9% |
| 3433053 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 50.0 | 5.39e-01 | 83.9% | 91.3% |
| 3575581 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.68 | 55.0 | 4.47e-01 | 84.9% | 61.2% |
| 5031673 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 50.0 | 4.84e-01 | 77.4% | 81.9% |
| 4561487 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.67 | 36.0 | 4.54e-01 | 73.1% | 89.1% |
| 3987332 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.66 | 36.0 | 4.48e-01 | 73.1% | 89.1% |
| 3563220 | 4.1.1.220 ↗ | beta barrels › SH3 › SH3 › SH3 › BAHCC1-like_Tudor | 0.65 | 48.0 | 5.06e-01 | 90.3% | 90.0% |
| 4026274 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 49.0 | 4.30e-01 | 82.8% | 53.6% |
| 3999482 | 4.1.1.311 ↗ | beta barrels › SH3 › SH3 › SH3 › BRWD_AD | 0.63 | 52.0 | 4.91e-01 | 87.1% | 92.7% |
| 3402045 | 220.1.1.158 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 | 0.62 | 43.0 | 4.20e-01 | 72.0% | 81.9% |
| 3659671 | 4.25.1.0 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain | 0.61 | 44.0 | 4.85e-01 | 78.5% | 100.0% |
| 4030767 | 3504.1.1.1 ↗ | beta barrels › MutM N-terminal domain-like › Hypothetical protein YojF › Hypothetical protein YojF › DUF1806 | 0.61 | 49.0 | 4.55e-01 | 88.2% | 100.0% |
| 3166677 | 3792.1.1.0 ↗ | beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain | 0.61 | 35.0 | 3.66e-01 | 73.1% | 61.2% |
| 3907176 | 4.1.1.248 ↗ | beta barrels › SH3 › SH3 › SH3 › CABIT | 0.61 | 49.0 | 5.03e-01 | 89.2% | 100.0% |
| 3810562 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 43.0 | 4.69e-01 | 78.5% | 93.3% |
| 4966131 | 4.1.3.1 ↗ | beta barrels › SH3 › SH3 › Calcium-binding protein CcbP › Calci_bind_CcbP | 0.60 | 43.0 | 4.09e-01 | 75.3% | 63.6% |
| 3540253 | 4.1.1.78 ↗ | beta barrels › SH3 › SH3 › SH3 › TTD | 0.59 | 50.0 | 5.06e-01 | 95.7% | 100.0% |
| 3931053 | 4.25.1.2 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD | 0.59 | 49.0 | 4.79e-01 | 88.2% | 100.0% |
| 3243256 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 47.0 | 3.92e-01 | 89.2% | 77.7% |
| 3937006 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 39.0 | 4.23e-01 | 71.0% | 97.4% |
| 3810292 | 3792.1.1.2 ↗ | beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › APC1_3rd | 0.57 | 33.0 | 3.66e-01 | 74.2% | 72.0% |
| 859 | 9.3.1.3 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C | 0.56 | 38.0 | 3.57e-01 | 72.0% | 96.8% |
| 4931484 | 304.102.1.7 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C | 0.56 | 38.0 | 2.95e-01 | 72.0% | 37.8% |
| 861 | 9.3.1.3 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C | 0.56 | 40.0 | 3.63e-01 | 75.3% | 99.2% |
| 3188712 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.56 | 49.0 | 4.79e-01 | 98.9% | 100.0% |
| 3320319 | 4.1.1.152 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF1262 | 0.55 | 45.0 | 3.97e-01 | 90.3% | 67.9% |
| 3482680 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 37.0 | 4.20e-01 | 71.0% | 100.0% |
| 3633079 | 220.1.1.194 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2nd_LRR | 0.55 | 43.0 | 3.58e-01 | 86.0% | 73.5% |
| 3213899 | 1.1.5.73 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin, DUF316 | 0.55 | 44.0 | 3.20e-01 | 90.3% | 83.2% |
| 3276425 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.53 | 40.0 | 2.87e-01 | 81.7% | 85.8% |
| 4929001 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 35.0 | 3.97e-01 | 71.0% | 96.9% |
| 3640699 | 5.1.4.408 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C | 0.53 | 40.0 | 2.77e-01 | 81.7% | 53.6% |
| 4960051 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.52 | 36.0 | 3.00e-01 | 72.0% | 53.4% |
| None | — | 0.52 | 41.0 | 2.76e-01 | 83.9% | 30.5% | |
| 3246120 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.52 | 39.0 | 3.18e-01 | 81.7% | 82.5% |
| 3710131 | 4.7.1.0 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 | 0.52 | 46.0 | 4.00e-01 | 97.8% | 88.9% |
| 5004623 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 40.0 | 4.03e-01 | 83.9% | 92.6% |
| 3787816 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.51 | 40.0 | 2.67e-01 | 83.9% | 22.2% |
| 3434538 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.51 | 37.0 | 2.89e-01 | 77.4% | 91.6% |
| 3545090 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.51 | 38.0 | 2.96e-01 | 81.7% | 67.7% |
| 860 | 9.3.1.3 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C | 0.50 | 39.0 | 3.55e-01 | 81.7% | 96.7% |
| 3772106 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.50 | 38.0 | 2.92e-01 | 81.7% | 67.1% |