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NC_055801.1__YP_010102761.1__KNU59_gp139__00140
Bact-VirNC_055801.1__YP_010102761.1__KNU59_gp139__00140
Identity
- Accession:
- NC_055801 ↗
- Kingdom:
- phage
Quality
75.0
mean pLDDT
Taxonomy
TaxID: 2590874
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-37
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3vm9A02 | 6.10.140.2110 | Special › Helix non-globular › Helix Hairpins › | 0.76 | 63.0 | 5.60e-01 | 100.0% | 71.9% |
| 2lqxA00 | 6.10.250.1700 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.76 | 58.0 | 5.71e-01 | 100.0% | 82.9% |
| 3knwB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.73 | 60.0 | 3.85e-01 | 100.0% | 19.8% |
| 2mvtA00 | 1.10.60.50 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › | 0.73 | 55.0 | 5.14e-01 | 83.8% | 66.0% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.73 | 60.0 | 4.85e-01 | 100.0% | 53.8% |
| 2ql2C00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.72 | 52.0 | 4.50e-01 | 94.6% | 50.0% |
| 1o9gA02 | 1.10.287.540 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.70 | 52.0 | 4.98e-01 | 86.5% | 69.8% |
| 2no4A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.70 | 58.0 | 4.77e-01 | 100.0% | 68.0% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.70 | 59.0 | 4.82e-01 | 100.0% | 51.4% |
| 3b0cW00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.69 | 57.0 | 4.61e-01 | 94.6% | 50.7% |
| 2jfrA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.69 | 53.0 | 3.38e-01 | 100.0% | 51.7% |
| 2bnlC00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.69 | 59.0 | 4.04e-01 | 100.0% | 30.6% |
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 51.0 | 4.24e-01 | 89.2% | 43.7% |
| 1v4gA01 | 6.10.140.800 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 52.0 | 4.46e-01 | 100.0% | 50.7% |
| 3p5jB02 | 1.10.20.120 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.67 | 57.0 | 4.31e-01 | 100.0% | 46.9% |
| 2efeA01 | 1.10.246.120 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.67 | 51.0 | 4.29e-01 | 100.0% | 53.1% |
| 7f0aA01 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.67 | 53.0 | 3.53e-01 | 100.0% | 19.7% |
| 3q1pA01 | 6.10.250.1120 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.67 | 57.0 | 5.61e-01 | 97.3% | 89.7% |
| 4kjmA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.67 | 53.0 | 4.86e-01 | 100.0% | 69.1% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 55.0 | 4.76e-01 | 100.0% | 84.6% |
| 1lrzA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 54.0 | 4.62e-01 | 97.3% | 56.5% |
| 3t69A02 | 3.30.420.310 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain | 0.66 | 54.0 | 3.38e-01 | 94.6% | 15.9% |
| 1bhaA00 | 1.10.287.170 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 57.0 | 4.74e-01 | 100.0% | 68.7% |
| 2yqyA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.66 | 56.0 | 3.88e-01 | 100.0% | 54.0% |
| 2rn7A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 52.0 | 4.46e-01 | 94.6% | 54.5% |
| 1n71B00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.64 | 52.0 | 3.36e-01 | 89.2% | 18.4% |
| 2w43A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.63 | 53.0 | 4.69e-01 | 100.0% | 64.9% |
| 2pziB03 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.62 | 52.0 | 3.54e-01 | 100.0% | 84.0% |
| 1go3F02 | 6.10.140.10 | Special › Helix non-globular › Helix Hairpins › | 0.62 | 45.0 | 4.23e-01 | 83.8% | 63.8% |
| 2pusA05 | 1.10.1740.80 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.61 | 51.0 | 3.98e-01 | 97.3% | 43.8% |
| 2fiwA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.60 | 46.0 | 3.21e-01 | 100.0% | 25.6% |
| 4dooA01 | 3.50.70.10 | Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › | 0.60 | 44.0 | 3.16e-01 | 100.0% | 24.2% |
| 1h1oA01 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.58 | 42.0 | 3.31e-01 | 75.7% | 68.0% |
| 1h1oA02 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.57 | 44.0 | 3.44e-01 | 86.5% | 66.7% |
| 2v4jA01 | 6.10.140.1420 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 49.0 | 4.16e-01 | 100.0% | 66.7% |
| 1fcdC01 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.55 | 44.0 | 3.54e-01 | 91.9% | 75.6% |
| 1hwyA01 | 1.10.287.140 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 41.0 | 3.72e-01 | 89.2% | 96.1% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3447846 | 5010.1.1.6 ↗ | extended segments › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV › SPC12 | 0.84 | 68.0 | 6.46e-01 | 100.0% | 79.2% |
| 3630756 | 5043.1.1.2 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › SPC12 | 0.82 | 66.0 | 5.55e-01 | 100.0% | 54.3% |
| 3965046 | 604.12.1.76 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › IspA | 0.82 | 66.0 | 5.57e-01 | 100.0% | 52.9% |
| 3182833 | 397.2.1.0 ↗ | few secondary structure elements › Toxic hairpin › Neurotoxin B-IV › Neurotoxin B-IV | 0.79 | 63.0 | 6.25e-01 | 100.0% | 95.0% |
| 3311421 | 4271.1.1.3 ↗ | alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like › DNA_primase_lrg_N | 0.78 | 66.0 | 4.02e-01 | 100.0% | 16.5% |
| 3699288 | 5076.2.1.9 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › Choline_transpo | 0.77 | 62.0 | 3.71e-01 | 100.0% | 12.7% |
| 5061623 | 7516.1.1.26 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_tranf_2_3 | 0.74 | 62.0 | 3.66e-01 | 100.0% | 11.4% |
| 3396806 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.73 | 58.0 | 4.62e-01 | 100.0% | 42.2% |
| 4130511 | 6026.1.1.19 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › GrpE | 0.73 | 60.0 | 5.29e-01 | 100.0% | 65.0% |
| 4999592 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.72 | 55.0 | 4.65e-01 | 100.0% | 48.0% |
| 3965150 | 316.1.1.43 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF294 | 0.71 | 58.0 | 3.92e-01 | 100.0% | 24.0% |
| 4084096 | 316.1.1.60 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2, DUF294 | 0.71 | 57.0 | 3.88e-01 | 100.0% | 24.0% |
| 2472945 | 1074.1.1.1 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgN | 0.71 | 58.0 | 4.70e-01 | 94.6% | 60.5% |
| 4642209 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.70 | 55.0 | 3.86e-01 | 100.0% | 26.7% |
| 3452409 | 375.1.1.261 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF30610 | 0.70 | 55.0 | 5.17e-01 | 89.2% | 71.1% |
| 3744583 | 558.1.1.14 ↗ | alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › HRI2_3H | 0.69 | 57.0 | 4.61e-01 | 100.0% | 55.0% |
| 3830182 | 142.1.1.21 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › KIX_2 | 0.69 | 57.0 | 4.61e-01 | 97.3% | 50.7% |
| 3799213 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.68 | 57.0 | 3.77e-01 | 94.6% | 78.0% |
| 3269970 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.68 | 51.0 | 3.57e-01 | 78.4% | 27.6% |
| 4943028 | 601.14.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin | 0.67 | 58.0 | 3.83e-01 | 100.0% | 25.8% |
| 3724838 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.66 | 57.0 | 4.67e-01 | 100.0% | 81.4% |
| 3775580 | 601.1.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin | 0.65 | 51.0 | 4.16e-01 | 89.2% | 46.7% |
| 3436614 | 568.1.1.17 ↗ | few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related › DUF7803 | 0.65 | 52.0 | 5.38e-01 | 100.0% | 97.1% |
| 3277885 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.65 | 55.0 | 3.49e-01 | 100.0% | 24.5% |
| 3505052 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.63 | 53.0 | 4.25e-01 | 100.0% | 66.3% |
| 3375945 | 109.4.1.619 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DYW_deaminase | 0.63 | 54.0 | 3.76e-01 | 100.0% | 31.3% |
| 3510272 | 101.1.1.213 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HRI2_3H | 0.63 | 48.0 | 4.12e-01 | 94.6% | 61.4% |
| 2833148 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.60 | 47.0 | 3.55e-01 | 100.0% | 32.2% |
| 3785632 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 49.0 | 2.95e-01 | 100.0% | 10.7% |
| 3690980 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.59 | 46.0 | 3.58e-01 | 100.0% | 35.2% |