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NC_055806.1__YP_010103167.1__KNU64_gp60__00060

Bact-Vir

NC_055806.1__YP_010103167.1__KNU64_gp60__00060

Identity

Accession:
NC_055806 ↗
Kingdom:
phage

Quality

86.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zierdtviridae› Skysandvirus› Gordonia_Phage_Lollipop1437

TaxID: 2588505

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-84
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a8tA02 1.10.287.890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.66 49.0 4.43e-01 79.7% 87.4%
3edpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 34.0 3.55e-01 83.5% 53.9%
4tv7D01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 37.0 3.61e-01 84.8% 54.1%
7e84A02 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.61 40.0 3.37e-01 94.9% 38.8%
6ig5A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.58 54.0 4.39e-01 100.0% 61.6%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 40.0 3.83e-01 91.1% 61.7%
3nrtA00 6.20.350.10 Special › Other non-globular › Actin; Chain A, domain 4 › 0.57 40.0 3.85e-01 81.0% 63.4%
3ab1B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 47.0 3.58e-01 96.2% 89.6%
3bg2A03 1.10.3410.10 Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain 0.56 39.0 3.70e-01 84.8% 59.4%
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 35.0 3.80e-01 97.5% 81.7%
4kzsA02 6.10.140.1870 Special › Helix non-globular › Helix Hairpins › 0.53 35.0 3.71e-01 97.5% 77.1%
2gtaA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.52 38.0 3.58e-01 100.0% 63.9%
8b70A01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.51 47.0 2.93e-01 100.0% 74.2%
1rktA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 38.0 3.14e-01 81.0% 74.8%
2a3qA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.50 40.0 3.61e-01 100.0% 61.1%
2w3sB03 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.50 29.0 2.79e-01 72.2% 46.8%
5k7fA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.50 40.0 3.34e-01 86.1% 79.0%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3963900 3018.1.1.1 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.68 35.0 3.42e-01 72.2% 44.7%
3181417 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.68 60.0 4.75e-01 100.0% 97.6%
3239045 3559.1.1.0 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 0.61 37.0 3.10e-01 87.3% 34.3%
3651198 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 39.0 4.43e-01 100.0% 94.5%
2526776 3191.1.1.1 ↗ alpha duplicates or obligate multimers › RyR motifs › RyR motifs › RyR motifs › RyR 0.59 44.0 4.22e-01 81.0% 69.2%
2671563 3191.1.1.1 ↗ alpha duplicates or obligate multimers › RyR motifs › RyR motifs › RyR motifs › RyR 0.56 43.0 4.06e-01 82.3% 68.5%
3688471 5063.1.1.0 ↗ alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK 0.56 45.0 4.30e-01 97.5% 73.7%
140713 170.2.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.56 43.0 3.52e-01 82.3% 53.8%
4964129 2003.1.2.7 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 0.56 42.0 3.15e-01 81.0% 80.5%
400221 3191.1.1.1 ↗ alpha duplicates or obligate multimers › RyR motifs › RyR motifs › RyR motifs › RyR 0.55 42.0 3.91e-01 81.0% 70.7%
5028612 4958.1.1.4 ↗ a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.55 48.0 3.54e-01 100.0% 60.5%
4286824 3018.1.1.1 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.52 29.0 2.85e-01 78.5% 43.3%
3976906 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.51 41.0 3.52e-01 100.0% 52.6%
4291138 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.51 43.0 3.71e-01 92.4% 83.2%
4974222 3191.1.1.0 ↗ alpha duplicates or obligate multimers › RyR motifs › RyR motifs › RyR motifs 0.51 41.0 3.30e-01 88.6% 49.4%
3554599 159.1.2.4 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › MazG-like 0.50 40.0 3.45e-01 100.0% 55.2%
4405368 306.7.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.50 42.0 3.67e-01 92.4% 86.7%