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NC_055806.1__YP_010103199.1__KNU64_gp92__00092

Bact-Vir

NC_055806.1__YP_010103199.1__KNU64_gp92__00092

Identity

Accession:
NC_055806 ↗
Kingdom:
phage

Quality

95.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zierdtviridae› Skysandvirus› Gordonia_Phage_Lollipop1437

TaxID: 2588505

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-36
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vhaA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.77 63.0 4.71e-01 100.0% 94.8%
5vmzA03 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.77 68.0 6.57e-01 100.0% 92.5%
3tiiA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.73 57.0 4.83e-01 100.0% 50.8%
4ggmX02 3.40.140.80 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › LpxI C-terminal catalytic domain 0.72 55.0 3.83e-01 100.0% 30.0%
3nuhB02 3.30.300.370 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.67 55.0 3.92e-01 100.0% 91.7%
3znuA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.66 51.0 4.01e-01 100.0% 86.2%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.65 52.0 4.82e-01 100.0% 88.0%
3w7tA04 3.30.1390.40 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30p/L7e 0.64 49.0 5.01e-01 100.0% 100.0%
3cp2A02 2.40.30.260 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.58 44.0 3.41e-01 97.1% 100.0%
3fzqA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.57 41.0 3.04e-01 82.9% 26.1%
3fysA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 46.0 3.15e-01 100.0% 23.5%
3pl5A02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.56 43.0 4.34e-01 100.0% 100.0%
3n6xA03 3.30.1490.270 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.56 45.0 4.05e-01 100.0% 67.9%
3r5dA02 3.30.60.70 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Trimeric LpxA-like enzymes 0.55 40.0 3.98e-01 100.0% 78.0%
1pzxA02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.55 42.0 4.28e-01 100.0% 100.0%
1fu0A00 3.30.1340.10 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like 0.54 40.0 3.13e-01 71.4% 80.5%
2ic2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 3.14e-01 100.0% 50.0%
2a90A02 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.50 40.0 3.50e-01 100.0% 100.0%
2jxxA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.50 37.0 3.18e-01 100.0% 82.1%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5059796 4326.1.1.0 ↗ a+b two layers › ERH-like › ERH-like › ERH-like 0.85 72.0 5.81e-01 100.0% 56.5%
3942480 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.79 63.0 4.22e-01 100.0% 23.9%
5067915 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.79 64.0 3.87e-01 100.0% 14.8%
1734768 4187.1.1.1 ↗ a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB 0.76 60.0 5.24e-01 100.0% 56.9%
3964707 2006.1.3.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.74 59.0 3.68e-01 100.0% 16.5%
4927165 4187.1.1.1 ↗ a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB 0.74 57.0 5.14e-01 100.0% 60.0%
None — 0.74 58.0 3.80e-01 100.0% 20.8%
3545106 386.1.1.126 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_7th_ZNF462 0.73 62.0 6.22e-01 97.1% 97.1%
3218303 379.1.1.3 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.72 55.0 5.26e-01 100.0% 73.3%
5020380 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.68 57.0 3.54e-01 100.0% 26.0%
3789608 2006.1.3.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.67 53.0 3.24e-01 100.0% 12.7%
3551383 2006.1.3.3 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim,TOPRIM_C 0.65 49.0 3.01e-01 100.0% 12.1%
4025819 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 46.0 4.62e-01 85.7% 88.6%
4990234 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.62 46.0 3.73e-01 100.0% 47.4%
3877814 4357.1.1.5 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_4 0.59 47.0 4.01e-01 100.0% 90.8%
4196087 101.1.2.491 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_BREX_BrxC 0.58 45.0 3.17e-01 91.4% 37.7%
5022012 101.1.2.491 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_BREX_BrxC 0.58 45.0 3.49e-01 91.4% 54.4%
3949142 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 41.0 4.13e-01 100.0% 100.0%
4945555 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 36.0 3.68e-01 100.0% 97.1%