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NC_055807.1__YP_010103228.1__KNU65_gp28__00028

Bact-Vir

NC_055807.1__YP_010103228.1__KNU65_gp28__00028

Identity

Accession:
NC_055807 ↗
Kingdom:
phage

Quality

88.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zierdtviridae› Ceetrepovirus› Corynebacterium_phage_Stickynote

TaxID: 2588503

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 36-199
PDB
Domain cluster: rep: JF974305__AGF91207.1__HAPG-00021__00021__D140-317
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wjsA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.79 65.0 6.41e-01 85.4% 92.0%
1w2tA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.76 57.0 6.19e-01 92.1% 93.3%
6hoxA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.73 64.0 5.64e-01 93.3% 90.1%
3v0aB03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.71 63.0 5.84e-01 95.1% 89.3%
3afgA03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.70 41.0 5.06e-01 90.9% 92.2%
3flpA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.69 62.0 5.62e-01 95.7% 88.5%
1ikpA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.69 58.0 5.23e-01 90.2% 74.9%
1j1tA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 57.0 5.14e-01 95.7% 98.7%
3am2A02 2.60.120.1050 Mainly Beta › Sandwich › Jelly Rolls › 0.62 39.0 4.49e-01 91.5% 86.3%
1wmdA02 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.62 43.0 5.05e-01 90.9% 100.0%
2luwA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.62 37.0 4.54e-01 90.2% 95.0%
3i8tA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 49.0 5.27e-01 87.2% 100.0%
3mepA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 51.0 5.03e-01 90.2% 91.6%
1tg7A05 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 43.0 4.25e-01 98.2% 68.2%
4yrdA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 32.0 3.72e-01 94.5% 76.5%
7jl1B01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.56 46.0 4.77e-01 88.4% 96.7%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.54 28.0 3.78e-01 98.2% 93.3%
3vy8X00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.53 41.0 3.25e-01 81.1% 94.4%
4o9gA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 32.0 3.49e-01 97.6% 69.6%
1iucA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.52 47.0 3.80e-01 98.8% 85.6%
1t16A00 2.40.160.60 Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) 0.52 42.0 3.10e-01 86.0% 78.7%
1e50B00 2.40.250.10 Mainly Beta › Beta Barrel › Polyomavirus Enhancer Binding Protein 2; Chain: A; › Core binding factor, beta subunit 0.51 30.0 3.30e-01 85.4% 70.8%
1kmoA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.51 36.0 2.53e-01 71.3% 46.8%
5d2lE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 29.0 3.43e-01 90.2% 83.3%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2324013 10.1.1.1 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 0.73 65.0 6.14e-01 93.9% 86.2%
5038687 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.72 41.0 5.22e-01 90.9% 93.0%
3402726 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.71 61.0 5.55e-01 89.6% 75.7%
1570612 10.1.1.25 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Toxin_R_bind_N 0.71 64.0 5.87e-01 95.1% 88.4%
5047474 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.71 41.0 5.25e-01 91.5% 97.9%
4196255 10.1.1.25 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Toxin_R_bind_N 0.71 63.0 5.84e-01 95.1% 89.3%
5045833 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.71 41.0 5.08e-01 90.9% 90.5%
2984295 10.1.1.25 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Toxin_R_bind_N 0.70 62.0 5.76e-01 95.1% 88.3%
3710431 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.70 36.0 4.69e-01 90.9% 87.4%
3521811 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.69 63.0 6.18e-01 96.3% 92.0%
169992 10.1.1.5 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Pentaxin 0.69 62.0 5.62e-01 95.7% 88.5%
5046630 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.69 41.0 4.87e-01 90.9% 84.3%
3926311 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 43.0 5.11e-01 93.3% 91.8%
3532406 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.68 59.0 5.71e-01 91.5% 87.2%
3903107 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.67 39.0 4.90e-01 87.8% 96.8%
4028847 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.66 38.0 4.77e-01 96.3% 92.0%
3519988 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.66 40.0 4.85e-01 91.5% 90.0%
5056893 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.64 43.0 4.91e-01 90.9% 91.7%
3912745 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.64 38.0 4.45e-01 90.2% 83.5%
4217963 10.32.1.19 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PPC 0.64 39.0 4.77e-01 90.9% 95.2%
4243201 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.63 54.0 5.19e-01 91.5% 91.4%
3708543 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.63 58.0 5.23e-01 100.0% 73.3%
4945587 10.1.2.188 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › Zn_Ribbon_1 0.63 40.0 4.68e-01 90.9% 88.3%
3755983 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.62 28.0 3.67e-01 73.8% 73.7%
4460606 10.32.1.177 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › UPF0669 0.62 37.0 4.42e-01 92.7% 88.2%
3300834 10.32.1.210 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GOLD_PATL1_C 0.61 39.0 4.55e-01 93.3% 90.4%
3342352 10.32.1.210 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GOLD_PATL1_C 0.61 39.0 4.63e-01 95.1% 94.5%
4531272 10.32.1.177 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › UPF0669 0.61 36.0 4.17e-01 92.7% 81.7%
4960627 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 41.0 4.88e-01 95.1% 99.1%
3258386 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 39.0 4.53e-01 90.9% 92.2%
5050767 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 39.0 4.62e-01 90.9% 99.1%
3862692 10.1.1.8 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.59 49.0 4.86e-01 90.9% 92.0%
4027822 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.58 50.0 4.61e-01 92.1% 88.1%
3710432 10.1.1.8 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.58 49.0 4.83e-01 90.9% 92.6%
3647162 10.32.1.212 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GUB_WAK_bind 0.58 41.0 3.44e-01 90.9% 43.6%
3974671 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.58 28.0 3.73e-01 74.4% 87.1%
3441931 246.2.1.8 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › PhoD 0.56 45.0 3.42e-01 86.6% 81.2%
4969127 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 37.0 4.45e-01 90.2% 100.0%
3290779 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.55 45.0 3.46e-01 87.2% 94.3%
5037531 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 42.0 2.80e-01 78.7% 45.4%
None — 0.54 42.0 3.35e-01 81.1% 94.8%
3940688 3698.1.1.1 ↗ beta sandwiches › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › PRMT5_C 0.52 37.0 3.35e-01 73.8% 93.0%
3924241 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 43.0 2.88e-01 90.9% 51.8%
5007185 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.51 38.0 4.00e-01 90.2% 84.8%
5045339 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.50 44.0 3.51e-01 96.3% 83.3%
D2 medium residues 215-365
PDB
Domain cluster: rep: NC_051587.1__YP_009950082.1__I5G64_gp30__00030__D288-464
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4il7A00 2.60.120.1300 Mainly Beta › Sandwich › Jelly Rolls › 0.59 29.0 3.65e-01 98.7% 78.8%
2vecA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 31.0 3.70e-01 100.0% 75.7%
1dg6A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.57 31.0 3.12e-01 90.1% 50.3%
1qwrA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 28.0 3.50e-01 98.7% 80.9%
2d93A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 25.0 2.71e-01 99.3% 47.8%
7pzaA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 26.0 2.92e-01 98.7% 55.7%
1hw5A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 27.0 2.91e-01 98.0% 54.3%
5by5A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 29.0 3.29e-01 100.0% 68.7%
4oi4C01 2.60.120.1030 Mainly Beta › Sandwich › Jelly Rolls › Clp1, DNA binding domain 0.53 27.0 3.44e-01 98.0% 84.5%
2i45D00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 28.0 3.42e-01 100.0% 77.8%
4h7lB00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 28.0 3.15e-01 100.0% 65.0%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 29.0 3.38e-01 100.0% 76.0%
3l5iA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 31.0 3.76e-01 90.7% 98.9%
3iwzA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 26.0 2.76e-01 98.7% 51.5%
1y7xA01 2.30.30.550 Mainly Beta › Roll › SH3 type barrels. › Major Vault Protein repeat 0.51 18.0 3.01e-01 82.1% 97.9%
2q30A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 28.0 3.48e-01 99.3% 90.9%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4928383 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.63 31.0 3.86e-01 99.3% 76.7%
4958880 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 28.0 3.41e-01 100.0% 66.3%
3386725 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.57 28.0 3.06e-01 97.4% 55.2%
3971408 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.56 26.0 2.57e-01 99.3% 38.2%
3997705 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 28.0 3.32e-01 98.0% 69.5%
4531272 10.32.1.177 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › UPF0669 0.55 28.0 3.21e-01 100.0% 64.3%
3214876 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 29.0 3.47e-01 100.0% 76.0%
5008219 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 32.0 3.75e-01 100.0% 86.0%
2997073 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.54 26.0 2.76e-01 98.7% 47.9%
3588802 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.54 27.0 2.71e-01 97.4% 45.2%
5030047 10.12.1.98 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › MannoseP_isomer 0.53 28.0 3.32e-01 100.0% 73.3%
5033980 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.53 26.0 3.05e-01 98.7% 63.6%
3169527 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 30.0 3.51e-01 100.0% 82.9%
3928463 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 27.0 3.13e-01 100.0% 71.4%
5040939 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 28.0 3.34e-01 97.4% 84.4%
3306922 11.1.1.60 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Vps26 0.50 42.0 4.10e-01 94.0% 81.8%