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NC_055807.1__YP_010103259.1__KNU65_gp79__00059
Bact-VirNC_055807.1__YP_010103259.1__KNU65_gp79__00059
Identity
- Accession:
- NC_055807 ↗
- Kingdom:
- phage
Quality
84.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Zierdtviridae›
Ceetrepovirus›
Corynebacterium_phage_Stickynote
TaxID: 2588503
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-74
Domain cluster:
rep: MN813685.1__QHB37262.1__SEA_GUDMIT_33__00033__D10-79
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF27050.1 best | Phage_P22_Y8K6 | 33.7 | 6.60e-08 | 95.8% | 59.4% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hqvA00 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.55 | 41.0 | 3.14e-01 | 80.3% | 47.7% |
| 3bezA02 | 3.40.1750.10 | Alpha Beta › 3-Layer(aba) Sandwich › peptide peptidase (sppa) fold › peptide peptidase (sppa) like domain | 0.54 | 37.0 | 3.37e-01 | 71.8% | 82.5% |
| 2r31A01 | 3.30.2180.10 | Alpha Beta › 2-Layer Sandwich › ATP12-like › ATP12-like | 0.54 | 41.0 | 4.19e-01 | 90.1% | 89.4% |
| 1kaeA03 | 1.20.5.1300 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.53 | 29.0 | 3.23e-01 | 95.8% | 65.5% |
| 2ea9A01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 33.0 | 3.08e-01 | 84.5% | 50.0% |
| 4v0bA00 | 3.30.720.210 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.51 | 32.0 | 3.37e-01 | 83.1% | 71.4% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3787728 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.61 | 29.0 | 2.92e-01 | 77.5% | 41.4% |
| 3747865 | 5050.1.1.6 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › OATP | 0.51 | 37.0 | 2.58e-01 | 81.7% | 75.2% |
| 3527475 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.51 | 39.0 | 3.30e-01 | 91.5% | 86.2% |
| None | — | 0.50 | 41.0 | 3.10e-01 | 100.0% | 58.1% |
D2
high
residues 76-130
Domain cluster:
rep: OR521085.1__WNO28375.1__SEA_PSONYX_67__00067__D47-100