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NC_055807.1__YP_010103273.1__KNU65_gp65__00073
Bact-VirNC_055807.1__YP_010103273.1__KNU65_gp65__00073
Identity
- Accession:
- NC_055807 ↗
- Kingdom:
- phage
Quality
92.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Zierdtviridae›
Ceetrepovirus›
Corynebacterium_phage_Stickynote
TaxID: 2588503
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-64
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2e5yA02 | 1.20.5.440 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain | 0.83 | 63.0 | 6.75e-01 | 86.8% | 95.6% |
| 3fxdB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.83 | 59.0 | 5.78e-01 | 86.8% | 69.0% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.75 | 61.0 | 5.39e-01 | 86.8% | 64.9% |
| 2oo2A00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.74 | 59.0 | 5.22e-01 | 86.8% | 64.5% |
| 1fs0G02 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.74 | 58.0 | 4.88e-01 | 86.8% | 78.7% |
| 4e6nA02 | 6.10.140.1010 | Special › Helix non-globular › Helix Hairpins › | 0.73 | 58.0 | 5.43e-01 | 86.8% | 81.8% |
| 2hn1A02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.72 | 53.0 | 4.23e-01 | 79.2% | 40.4% |
| 7aalA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.69 | 54.0 | 3.42e-01 | 86.8% | 17.3% |
| 1te2A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.66 | 51.0 | 4.67e-01 | 84.9% | 94.4% |
| 4gltA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.65 | 48.0 | 3.88e-01 | 86.8% | 38.6% |
| 7lb8B01 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.63 | 49.0 | 3.06e-01 | 86.8% | 55.5% |
| 2a0bA00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.63 | 50.0 | 3.98e-01 | 92.5% | 89.8% |
| 4h63H01 | 1.20.58.1710 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 49.0 | 4.46e-01 | 86.8% | 65.3% |
| 1jb0K00 | 1.20.860.20 | Mainly Alpha › Up-down Bundle › Alpha-t-alpha › Photosystem I PsaK, reaction centre | 0.62 | 40.0 | 4.23e-01 | 79.2% | 76.1% |
| 6hj2A00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.61 | 52.0 | 3.37e-01 | 100.0% | 40.9% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.61 | 48.0 | 4.30e-01 | 86.8% | 89.2% |
| 1a22A00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.60 | 52.0 | 3.61e-01 | 98.1% | 38.9% |
| 2qdjA03 | 1.10.472.140 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.59 | 46.0 | 3.80e-01 | 96.2% | 63.8% |
| 7p3rA01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.59 | 48.0 | 3.02e-01 | 94.3% | 39.1% |
| 2v4jA01 | 6.10.140.1420 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 44.0 | 4.22e-01 | 90.6% | 77.8% |
| 1gkuB03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 49.0 | 3.45e-01 | 100.0% | 40.0% |
| 1vdyA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.56 | 45.0 | 3.52e-01 | 100.0% | 67.9% |
| 2w9mA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.55 | 46.0 | 4.26e-01 | 94.3% | 95.6% |
| 1hlvA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.55 | 38.0 | 3.67e-01 | 86.8% | 65.0% |
| 2bskB00 | 1.10.287.810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains | 0.54 | 43.0 | 4.06e-01 | 88.7% | 75.4% |
| 1cukA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.53 | 40.0 | 3.64e-01 | 98.1% | 59.2% |
| 1ldjA02 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.53 | 43.0 | 3.33e-01 | 92.5% | 89.4% |
| 4irnA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.52 | 44.0 | 3.49e-01 | 100.0% | 83.2% |
| 2imsA00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.52 | 42.0 | 3.15e-01 | 100.0% | 76.1% |
| 3ll7A01 | 1.10.10.1110 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Methyltransferase PG1098, N-terminal domain | 0.52 | 36.0 | 3.34e-01 | 73.6% | 58.3% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.52 | 41.0 | 3.49e-01 | 86.8% | 82.8% |
| 4m70B00 | 1.10.246.200 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain | 0.51 | 44.0 | 3.74e-01 | 100.0% | 91.2% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3289263 | 605.1.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 | 0.81 | 67.0 | 6.02e-01 | 86.8% | 65.7% |
| 3254789 | 3939.1.1.337 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › Bap31 | 0.81 | 65.0 | 4.33e-01 | 86.8% | 24.2% |
| 4984419 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.74 | 63.0 | 3.99e-01 | 92.5% | 64.5% |
| 3719896 | 3755.2.1.0 ↗ | alpha bundles › YscO-like › Flagellar FliJ protein › Flagellar FliJ protein | 0.74 | 55.0 | 4.51e-01 | 86.8% | 44.2% |
| 3410865 | 64.4.1.0 ↗ | beta meanders › WW domain-like › Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain › Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain | 0.72 | 56.0 | 5.60e-01 | 86.8% | 89.1% |
| 3966460 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.72 | 65.0 | 4.10e-01 | 100.0% | 65.4% |
| 3437734 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.70 | 53.0 | 4.94e-01 | 86.8% | 66.2% |
| 4886450 | 511.1.1.1 ↗ | beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › HSP70 | 0.68 | 54.0 | 4.71e-01 | 88.7% | 57.5% |
| 4172979 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.68 | 44.0 | 3.65e-01 | 88.7% | 36.0% |
| 3281737 | 101.1.1.5 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › TetR_N | 0.65 | 47.0 | 3.49e-01 | 75.5% | 46.9% |
| 3269634 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.65 | 45.0 | 4.30e-01 | 100.0% | 63.3% |
| 3395965 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.64 | 49.0 | 4.88e-01 | 88.7% | 83.6% |
| 3990854 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.64 | 47.0 | 4.06e-01 | 83.0% | 100.0% |
| 3532900 | 5071.1.1.0 ↗ | alpha bundles › cytochrome bc1 complex 11 kDa protein-like › Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 0.63 | 49.0 | 4.52e-01 | 86.8% | 68.6% |
| 4015684 | 109.2.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid | 0.61 | 48.0 | 2.86e-01 | 94.3% | 25.4% |
| 3724595 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.61 | 47.0 | 4.56e-01 | 84.9% | 75.0% |
| 3587125 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.58 | 46.0 | 3.30e-01 | 86.8% | 29.4% |
| 4405869 | 101.1.2.451 ↗ | alpha arrays › HTH › HTH › winged helix domain › NPR3 | 0.57 | 46.0 | 3.86e-01 | 88.7% | 82.2% |
| 3199872 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.57 | 49.0 | 4.06e-01 | 100.0% | 95.0% |
| 3870169 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 46.0 | 3.07e-01 | 100.0% | 43.3% |
| 4170726 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.50 | 37.0 | 3.38e-01 | 86.8% | 92.5% |