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NC_055807.1__YP_010103277.1__KNU65_gp61__00077

Bact-Vir

NC_055807.1__YP_010103277.1__KNU65_gp61__00077

Identity

Accession:
NC_055807 ↗
Kingdom:
phage

Quality

89.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zierdtviridae› Ceetrepovirus› Corynebacterium_phage_Stickynote

TaxID: 2588503

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-103
PDB
Domain cluster: rep: MK504445.1__QBJ03767.1__ATCCB_0074__00074__D1-84
Pfam (4)
AccessionNameScoreE-valueQ covHMM cov
PF00805.29 best Pentapeptide 45.5 5.70e-12 36.9% 95.0%
PF00805.29 Pentapeptide 49.2 4.20e-13 36.9% 95.0%
PF00805.29 Pentapeptide 35.0 1.10e-08 31.1% 77.5%
PF00805.29 Pentapeptide 27.0 3.70e-06 30.1% 77.5%
D2 medium residues 104-183
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4u7iA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.63 49.0 4.70e-01 83.7% 80.6%
2lw1A00 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.62 46.0 4.53e-01 77.5% 80.0%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.62 41.0 4.78e-01 73.8% 96.5%
1kt1A03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 45.0 3.57e-01 82.5% 39.9%
1cf7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 49.0 4.93e-01 88.7% 100.0%
3aonA00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 44.0 3.41e-01 80.0% 93.6%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.59 47.0 4.67e-01 86.3% 87.1%
3uumA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 45.0 3.96e-01 82.5% 77.0%
3u9jA00 1.20.120.520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like 0.59 47.0 3.80e-01 87.5% 93.0%
2gf4A00 1.20.1270.110 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Uncharacterised protein family UPF0058 0.58 36.0 3.52e-01 73.8% 55.7%
3g3oA00 3.20.100.30 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › VTC, catalytic tunnel domain 0.56 45.0 3.16e-01 91.3% 46.6%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 43.0 3.82e-01 86.3% 88.3%
5o7oC01 3.30.310.280 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.54 39.0 3.39e-01 76.2% 88.0%
2bskB00 1.10.287.810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains 0.54 35.0 3.85e-01 75.0% 83.1%
1lfkA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.53 46.0 3.03e-01 100.0% 71.5%
5nohA00 1.20.120.1350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain 0.53 39.0 3.61e-01 80.0% 60.2%
1hciA04 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 43.0 3.88e-01 90.0% 83.3%
3ejbH02 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.53 46.0 3.25e-01 100.0% 82.4%
2qlzA02 6.10.250.2960 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.52 38.0 3.74e-01 77.5% 87.2%
1xjuA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.51 38.0 3.19e-01 82.5% 96.2%
1egdA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.51 42.0 3.57e-01 93.8% 92.9%
3ip3A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 39.0 2.92e-01 83.7% 67.0%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.50 39.0 2.98e-01 87.5% 82.4%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3295746 101.1.2.454 ↗ alpha arrays › HTH › HTH › winged helix domain › FAM91_N 0.64 37.0 3.81e-01 82.5% 60.0%
3743121 109.4.1.80 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRN3 0.64 46.0 3.41e-01 86.3% 29.8%
3813837 622.4.1.0 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.63 44.0 4.57e-01 81.2% 77.3%
3995535 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.62 44.0 4.48e-01 85.0% 73.8%
3178397 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 45.0 3.37e-01 86.3% 31.6%
56801 150.6.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › SO2669-like › SO2669-like 0.61 40.0 4.43e-01 71.2% 84.4%
4014485 5044.1.1.0 ↗ extended segments › PsbZ-like › PsbZ-like › PsbZ-like 0.61 46.0 4.36e-01 86.3% 67.4%
3391939 5069.1.3.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.61 43.0 3.84e-01 75.0% 61.7%
3532924 174.1.1.43 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › CD20 0.60 51.0 3.97e-01 92.5% 71.8%
3796707 2485.1.1.17 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › OST3_OST6 0.60 41.0 2.80e-01 76.2% 19.7%
5043620 3352.1.1.1 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3 0.60 47.0 2.91e-01 88.7% 14.6%
3581098 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.59 40.0 3.72e-01 76.2% 54.3%
3618935 192.15.1.77 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › OST3_OST6 0.59 42.0 3.74e-01 75.0% 60.9%
3555578 633.22.1.15 ↗ alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) › OST3_OST6 0.58 40.0 3.67e-01 78.8% 52.7%
None — 0.57 40.0 2.91e-01 72.5% 28.2%
3832382 5069.1.3.60 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › OST3_OST6 0.57 40.0 3.55e-01 77.5% 49.2%
3685185 192.17.1.10 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › eIF-3c_N 0.56 49.0 4.34e-01 98.8% 74.2%
4555056 141.1.1.6 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › HEPPP_synt_1 0.56 48.0 3.58e-01 95.0% 50.5%
3701882 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.55 43.0 4.07e-01 85.0% 80.0%
3507500 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 44.0 4.12e-01 90.0% 80.0%
4368947 141.1.1.6 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › HEPPP_synt_1 0.51 45.0 3.20e-01 100.0% 82.4%
4028763 4953.1.1.19 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › RIFIN 0.50 38.0 3.12e-01 85.0% 72.1%