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NC_055807.1__YP_010103288.1__KNU65_gp50__00088

Bact-Vir

NC_055807.1__YP_010103288.1__KNU65_gp50__00088

Identity

Accession:
NC_055807 ↗
Kingdom:
phage

Quality

93.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-96
PDB
CATH (62)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.72 53.0 5.13e-01 76.7% 100.0%
3ehgA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.65 47.0 4.19e-01 75.6% 69.6%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.63 54.0 4.47e-01 100.0% 92.0%
3bb9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 44.0 4.01e-01 74.4% 83.2%
4lgqA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 45.0 3.97e-01 75.6% 83.5%
4hy1A02 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.62 43.0 3.52e-01 71.1% 66.5%
1sjwA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 44.0 3.82e-01 74.4% 77.5%
3nqkA02 2.40.128.440 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 0.61 53.0 4.48e-01 100.0% 91.3%
4gb5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 43.0 3.70e-01 74.4% 77.7%
1z5bB03 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.61 42.0 3.65e-01 73.3% 70.5%
1fw3A00 2.40.230.10 Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Phospholipase A1 0.60 43.0 3.13e-01 74.4% 72.4%
6ihjC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 42.0 3.53e-01 74.4% 78.6%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 42.0 3.82e-01 74.4% 82.0%
3kkgA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 43.0 3.73e-01 75.6% 77.1%
3grdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 43.0 3.82e-01 76.7% 84.1%
1v8cA02 3.30.1370.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain 0.59 41.0 4.40e-01 100.0% 81.2%
3er7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 40.0 3.67e-01 71.1% 84.6%
1p4tA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.58 50.0 4.32e-01 100.0% 97.4%
5ig0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 41.0 3.66e-01 74.4% 80.9%
2imjD01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 41.0 3.56e-01 74.4% 70.4%
5aigA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 41.0 3.70e-01 74.4% 80.6%
6jqlA03 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 42.0 3.43e-01 78.9% 83.1%
2wjqA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.57 50.0 3.92e-01 100.0% 100.0%
3robA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 41.0 3.68e-01 75.6% 83.2%
2jq5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 42.0 3.80e-01 78.9% 76.6%
3ehcB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 41.0 3.69e-01 75.6% 82.0%
3ebyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 40.0 3.44e-01 74.4% 80.4%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 35.0 3.32e-01 84.4% 50.5%
3gp6A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.56 50.0 4.21e-01 100.0% 82.6%
3gwrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 42.0 3.74e-01 78.9% 88.2%
1pn2B01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 41.0 3.48e-01 100.0% 46.6%
2bi0A01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 42.0 3.59e-01 82.2% 98.0%
3gzbA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 39.0 3.35e-01 73.3% 69.5%
2vdfA00 2.40.128.100 Mainly Beta › Beta Barrel › Lipocalin › OPCA outer membrane adhesin/invasin 0.55 47.0 3.64e-01 98.9% 99.6%
2k78A00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 47.0 4.33e-01 100.0% 91.3%
6rtqA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.55 47.0 4.21e-01 97.8% 87.2%
4h3uA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 42.0 3.81e-01 100.0% 58.5%
4k02A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 37.0 3.32e-01 100.0% 48.8%
4afkA00 2.40.160.100 Mainly Beta › Beta Barrel › Porin › 0.55 42.0 2.81e-01 86.7% 87.9%
1p97A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 41.0 3.84e-01 81.1% 89.5%
2rfrA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 38.0 3.29e-01 74.4% 73.4%
3rt0C00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 43.0 3.54e-01 87.8% 57.6%
7neaA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.54 44.0 4.05e-01 92.2% 99.2%
2bngC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 38.0 3.32e-01 73.3% 74.3%
4jxuA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.54 45.0 4.08e-01 96.7% 93.0%
3d4gE03 2.60.40.3210 Mainly Beta › Sandwich › Immunoglobulin-like › Zona pellucida, ZP-N domain 0.53 41.0 3.96e-01 81.1% 99.0%
4kwyA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.53 37.0 3.26e-01 72.2% 56.9%
1h2iA01 3.30.390.80 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 0.53 40.0 3.37e-01 87.8% 48.0%
1h4uA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.53 46.0 3.44e-01 100.0% 38.4%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.53 45.0 4.35e-01 98.9% 99.1%
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 37.0 3.42e-01 74.4% 80.8%
3f14A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 40.0 3.81e-01 100.0% 67.9%
4l3nA01 3.30.70.1840 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Spike protein, C-terminal core receptor binding subdomain 0.52 45.0 3.88e-01 95.6% 88.7%
3ejvA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 37.0 3.13e-01 74.4% 83.0%
1kt8A01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.52 43.0 3.58e-01 98.9% 77.1%
3ec9A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 40.0 3.66e-01 100.0% 61.2%
4i5sA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 39.0 3.86e-01 82.2% 89.8%
2gexA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 44.0 3.87e-01 100.0% 75.3%
3mr0A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 35.0 3.33e-01 72.2% 83.6%
1fx3B00 3.10.420.10 Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like 0.50 40.0 3.42e-01 100.0% 52.3%
5u3fB01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.50 42.0 3.76e-01 98.9% 100.0%
3rtyB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 45.0 4.27e-01 100.0% 99.1%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3736685 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.76 51.0 4.08e-01 76.7% 36.5%
5074212 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.70 47.0 4.45e-01 85.6% 57.3%
5047097 873.1.1.1 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R 0.67 53.0 4.32e-01 85.6% 81.2%
3720665 244.1.1.18 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › FAD_binding-like 0.65 45.0 3.74e-01 100.0% 41.9%
3787933 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.64 47.0 3.87e-01 76.7% 81.2%
3917010 243.3.1.20 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › AKAP28 0.64 49.0 4.36e-01 81.1% 65.6%
3977502 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.63 45.0 4.01e-01 74.4% 79.2%
4972803 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.63 45.0 3.48e-01 74.4% 57.0%
3784499 331.3.1.6 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.62 48.0 3.84e-01 83.3% 44.3%
5037122 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.62 56.0 4.35e-01 100.0% 85.6%
3481772 331.9.1.4 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla 0.62 48.0 4.30e-01 92.2% 60.2%
3843944 243.5.1.7 a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › AKAP28 0.62 47.0 4.22e-01 81.1% 64.8%
5037172 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.62 52.0 4.30e-01 92.2% 53.1%
3749143 243.3.1.20 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › AKAP28 0.61 47.0 4.24e-01 82.2% 64.8%
5057736 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.61 52.0 4.52e-01 92.2% 66.7%
3600112 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.61 53.0 4.03e-01 100.0% 96.5%
3284100 243.1.1.10 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.61 43.0 3.56e-01 74.4% 71.8%
3837731 5084.1.1.3 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › MSP 0.60 48.0 4.43e-01 87.8% 96.6%
3958686 331.3.1.20 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › KshA_C 0.60 48.0 3.64e-01 86.7% 39.5%
3265154 4252.1.1.10 beta barrels › AttH-like › AttH-like › AttH-like › DUF2804 0.60 54.0 4.77e-01 100.0% 100.0%
5003871 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.60 42.0 3.72e-01 74.4% 82.1%
5002369 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 42.0 3.88e-01 73.3% 86.1%
3964096 5084.1.1.4 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity 0.59 51.0 4.20e-01 100.0% 84.6%
3896317 11.1.1.640 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP-N 0.57 43.0 4.23e-01 81.1% 100.0%
3838398 5084.1.1.15 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.57 49.0 4.02e-01 98.9% 90.6%
3287329 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.57 48.0 3.76e-01 100.0% 42.6%
4020185 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.57 37.0 3.36e-01 71.1% 50.0%
3787012 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 50.0 4.10e-01 100.0% 64.1%
4118362 314.1.1.11 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.56 49.0 3.83e-01 98.9% 69.8%
3177725 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.56 49.0 3.60e-01 100.0% 46.7%
4974181 331.3.1.74 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PF27226 0.55 48.0 4.65e-01 100.0% 84.8%
3233212 382.1.1.23 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › PF29371 0.55 49.0 4.08e-01 100.0% 68.1%
5054725 504.1.1.0 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.55 42.0 3.81e-01 97.8% 60.8%
4324607 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.54 49.0 4.03e-01 98.9% 68.1%
3268156 223.2.1.4 a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN 0.54 49.0 3.83e-01 100.0% 62.7%
3740851 331.3.1.30 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF3074 0.54 45.0 3.42e-01 94.4% 55.0%
3735309 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 37.0 3.76e-01 73.3% 85.6%
3993872 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.53 44.0 3.47e-01 92.2% 49.5%
3716676 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 45.0 3.89e-01 96.7% 65.5%
2163935 243.1.1.10 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.52 46.0 4.09e-01 100.0% 82.2%
1835333 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.52 38.0 3.48e-01 100.0% 56.9%
4970968 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.52 46.0 4.28e-01 100.0% 76.1%
3594386 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.52 41.0 4.03e-01 97.8% 78.9%
3597758 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.51 41.0 2.89e-01 91.1% 48.2%
3018445 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.51 47.0 3.38e-01 100.0% 61.9%
3985235 5084.10.1.1 beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD 0.50 43.0 2.71e-01 98.9% 94.1%
3173730 222.1.1.27 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PF27832 0.50 41.0 3.41e-01 87.8% 70.3%
3571632 223.1.1.29 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 0.50 39.0 3.56e-01 87.8% 70.0%