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NC_055815.1__YP_010104210.1__KNU73_gp70__00070

Bact-Vir

NC_055815.1__YP_010104210.1__KNU73_gp70__00070

Identity

Accession:
NC_055815 ↗
Kingdom:
phage

Quality

72.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Brujitavirus› Mycobacterium_phage_Xula

TaxID: 2599884

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-81
PDB
Domain cluster: rep: OR521087.1__WNO28611.1__SEA_MADKILLAH_27__00027__D3-77
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26922.1 best DUF8277 81.6 6.20e-23 98.7% 98.7%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4oa3A00 3.10.310.50 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.57 46.0 3.87e-01 89.9% 86.5%
4qdgA02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 50.0 4.24e-01 100.0% 94.1%
3fk9A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.56 50.0 4.06e-01 100.0% 59.5%
1ym3A00 3.40.1050.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase 0.55 35.0 2.67e-01 97.5% 25.9%
2yjgA02 3.40.50.11440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LarA, N-terminal domain 0.55 39.0 2.82e-01 74.7% 41.6%
3ieyB00 3.40.1350.150 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.54 46.0 3.80e-01 100.0% 50.7%
5anvA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.54 48.0 3.91e-01 100.0% 56.2%
6lpmA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.53 44.0 3.22e-01 97.5% 90.0%
3ib5A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.52 45.0 2.95e-01 96.2% 24.3%
4hlbA00 3.30.70.2960 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 35.0 3.38e-01 73.4% 60.0%
2oluA01 3.90.1310.20 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › 0.51 44.0 4.18e-01 100.0% 81.8%
3payB02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 44.0 3.78e-01 100.0% 88.6%
6d6zA02 3.40.50.11440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LarA, N-terminal domain 0.51 43.0 3.10e-01 94.9% 87.9%
4hn3A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.50 43.0 2.86e-01 96.2% 24.4%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
169959 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.56 50.0 4.06e-01 100.0% 59.9%
5062353 7601.1.1.1 ↗ a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lar_N 0.56 39.0 2.81e-01 72.2% 37.9%
4960637 327.7.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.55 39.0 3.74e-01 73.4% 67.8%
4934312 7601.1.1.0 ↗ a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain 0.55 41.0 3.03e-01 79.7% 78.6%
5051542 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 42.0 3.27e-01 88.6% 76.3%
3620960 2008.1.1.147 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF29557 0.52 45.0 2.97e-01 98.7% 63.3%
3200147 5104.1.1.3 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 0.52 41.0 3.31e-01 92.4% 91.1%
4937052 2006.1.6.15 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 0.52 41.0 2.96e-01 89.9% 43.6%
5069250 7601.1.1.1 ↗ a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lar_N 0.51 38.0 2.73e-01 81.0% 79.6%
4956673 7601.1.1.1 ↗ a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lar_N 0.51 38.0 2.81e-01 81.0% 83.1%