NC_055821.1__YP_010104697.1__KNU79_gp25__00025

Bact-Vir

Identity

79.6 mean pLDDT

Heunggongvirae› Uroviricota› Caudoviricetes› Zierdtviridae› Sukkupivirus› Gordonia_phage_NadineRae

TaxID: 2652882

View cluster (51 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 18-70_153-283

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2imjD01	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.57	32.0	3.62e-01	94.6%	70.4%
4l8hB00	3.30.380.10	Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein	0.54	30.0	3.60e-01	77.7%	78.9%
3f14A00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.53	26.0	3.21e-01	84.8%	72.3%
3cnxA00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.52	27.0	3.11e-01	85.9%	63.8%
2f86B00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.52	27.0	3.14e-01	84.8%	68.2%
3hx8A00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.51	27.0	3.16e-01	85.9%	70.3%
1lshA03	2.20.50.20	Mainly Beta › Single Sheet › Outer Surface Protein A; domain 2 › Lipovitellin. Chain A, domain 3	0.51	26.0	3.58e-01	71.7%	94.9%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
958405	9.2.1.1 ↗	beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Avidin	0.57	30.0	3.94e-01	78.8%	93.8%
3385471	4998.1.1.0 ↗	beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain	0.55	30.0	3.34e-01	77.2%	64.8%
3197622	4210.1.1.0 ↗	a+b two layers › WGR domain › WGR domain › WGR domain	0.54	28.0	3.65e-01	83.2%	86.7%
3587340	243.3.1.0 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin	0.54	25.0	3.54e-01	72.3%	91.8%
4106765	243.1.1.18 ↗	a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2	0.52	27.0	3.15e-01	84.8%	66.9%
5048351	243.1.1.18 ↗	a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2	0.52	27.0	2.97e-01	85.3%	58.6%
None	—		0.51	36.0	2.38e-01	71.2%	88.5%
3576754	809.1.1.0 ↗	a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP	0.51	29.0	3.69e-01	85.9%	92.7%
3645656	243.3.1.19 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615	0.51	23.0	3.45e-01	77.7%	98.8%
1146680	243.1.1.6 ↗	a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8	0.51	29.0	3.21e-01	83.2%	69.4%
3718996	5.1.4.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed	0.50	35.0	2.62e-01	70.7%	85.2%

D2 medium residues 84-152_284-306

PDB

Domain cluster: representative

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3283304	150.1.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin	0.54	44.0	3.10e-01	90.2%	79.0%

D3 medium residues 338-415

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1lvfB00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.67	47.0	4.26e-01	73.1%	100.0%
3lbxB01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.58	42.0	3.87e-01	79.5%	100.0%
4mbsA00	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.52	38.0	2.57e-01	80.8%	52.0%
3nyjA00	1.20.120.770	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain	0.50	43.0	3.30e-01	96.2%	72.9%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3249849	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.64	43.0	3.86e-01	70.5%	92.7%
3792010	604.1.1.105 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_Anc-1_2	0.63	48.0	4.43e-01	84.6%	100.0%
3619577	192.5.1.0 ↗	alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat	0.62	42.0	4.00e-01	78.2%	60.0%

D4 medium residues 416-490

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4p1wA00	1.10.10.2570	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.50	33.0	3.39e-01	73.3%	69.4%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4927758	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.56	38.0	3.91e-01	70.7%	92.9%
3640035	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.50	36.0	3.47e-01	80.0%	64.7%