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NC_055821.1__YP_010104750.1__KNU79_gp78__00078

Bact-Vir

NC_055821.1__YP_010104750.1__KNU79_gp78__00078

Identity

Accession:
NC_055821 ↗
Kingdom:
phage

Quality

78.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zierdtviridae› Sukkupivirus› Gordonia_phage_NadineRae

TaxID: 2652882

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-204
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qszA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 37.0 3.89e-01 100.0% 68.9%
5gv0A00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.56 31.0 3.37e-01 100.0% 63.0%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 33.0 3.69e-01 100.0% 75.3%
3fo5B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 35.0 3.38e-01 100.0% 55.8%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3456369 897.1.1.1 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.56 38.0 3.96e-01 100.0% 73.5%
3935996 59.1.1.9 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › EAF 0.55 23.0 3.06e-01 74.6% 69.5%
3680674 897.1.1.1 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.54 37.0 3.74e-01 100.0% 68.7%
3778939 59.1.1.15 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › ELL 0.51 22.0 3.05e-01 75.1% 80.0%
3995954 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.51 27.0 3.41e-01 91.5% 84.2%
3789935 3369.1.1.0 ↗ beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 0.51 33.0 3.40e-01 100.0% 66.8%
3932815 11.1.1.53 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.51 28.0 3.14e-01 97.5% 65.6%
5013126 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 28.0 3.41e-01 79.6% 84.8%