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NC_055822.1__YP_010104886.1__KNU80_gp143__00122

Bact-Vir

NC_055822.1__YP_010104886.1__KNU80_gp143__00122

Identity

Accession:
NC_055822 ↗
Kingdom:
phage

Quality

90.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stanwilliamsviridae› Samistivirus› Streptomyces_phage_Daubenski

TaxID: 2653725

Cluster

View cluster (36 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-66
PDB
Domain cluster: rep: OQ504960.1__WID41994.1__X__00022__D3-68
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 50.0 4.96e-01 100.0% 71.2%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 53.0 5.56e-01 100.0% 89.7%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.70 46.0 5.09e-01 100.0% 88.0%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 52.0 5.58e-01 100.0% 94.5%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 50.0 5.07e-01 98.4% 80.6%
4flnA02 3.20.190.20 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › 0.66 57.0 4.35e-01 96.9% 55.3%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.66 48.0 5.01e-01 98.4% 85.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 51.0 4.71e-01 100.0% 67.5%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.64 51.0 4.83e-01 100.0% 72.7%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.61 45.0 4.49e-01 96.9% 77.3%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 50.0 4.82e-01 100.0% 82.2%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 46.0 4.30e-01 100.0% 67.9%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.58 51.0 4.54e-01 100.0% 69.9%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 42.0 4.14e-01 100.0% 71.8%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.58 40.0 4.28e-01 90.6% 85.7%
2w00A02 3.90.640.50 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › 0.57 44.0 4.27e-01 85.9% 84.9%
4c92A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 50.0 4.02e-01 100.0% 50.0%
2r6fA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.56 42.0 4.08e-01 81.2% 94.4%
4c92F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 50.0 4.70e-01 100.0% 83.1%
2vugA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.56 42.0 4.06e-01 81.2% 94.4%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 38.0 4.02e-01 98.4% 84.9%
5d1oA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.56 41.0 3.99e-01 81.2% 95.9%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 39.0 4.00e-01 90.6% 76.6%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.55 46.0 3.91e-01 100.0% 81.4%
1js3A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 37.0 3.30e-01 100.0% 46.4%
3oyyB03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 34.0 3.55e-01 79.7% 69.0%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 37.0 3.67e-01 100.0% 66.7%
1awjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 43.0 4.16e-01 95.3% 75.3%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.55 36.0 3.96e-01 96.9% 91.7%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.54 41.0 4.13e-01 100.0% 85.7%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 37.0 3.68e-01 100.0% 72.7%
4v0bA00 3.30.720.210 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.53 38.0 3.92e-01 90.6% 82.5%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 37.0 3.70e-01 100.0% 73.5%
1d8cA03 1.20.1220.12 Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III 0.52 36.0 2.89e-01 73.4% 76.3%
5zr6A02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.52 43.0 4.18e-01 98.4% 85.5%
3uoxB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 36.0 2.37e-01 73.4% 37.3%
1c0gA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.52 42.0 3.78e-01 92.2% 77.2%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.52 36.0 3.76e-01 89.1% 87.5%
4oijA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 38.0 3.69e-01 85.9% 71.8%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3959440 4.1.1.180 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3107 0.90 84.0 8.42e-01 100.0% 98.5%
4147528 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.85 77.0 7.51e-01 100.0% 98.6%
135648 4.1.1.142 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq_1 0.73 52.0 5.22e-01 98.4% 73.8%
5002601 4.1.1.485 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6897 0.72 50.0 5.25e-01 96.9% 79.7%
3968342 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.72 54.0 5.80e-01 98.4% 96.2%
25624 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.72 53.0 5.77e-01 98.4% 98.1%
3712219 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.72 54.0 5.41e-01 100.0% 80.0%
5027750 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 52.0 5.47e-01 100.0% 90.9%
4540843 4.1.1.434 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2642 0.71 51.0 5.09e-01 100.0% 73.8%
3839016 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 51.0 5.12e-01 100.0% 75.4%
3977126 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.71 54.0 5.79e-01 100.0% 96.4%
4142364 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.70 46.0 4.61e-01 96.9% 66.2%
4400642 4.1.1.257 ↗ beta barrels › SH3 › SH3 › SH3 › Flag1_repress 0.70 49.0 4.54e-01 98.4% 56.5%
4932434 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.70 50.0 4.94e-01 100.0% 70.0%
3290899 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.70 51.0 5.02e-01 100.0% 71.4%
4368811 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.70 50.0 5.28e-01 100.0% 87.3%
858452 4.1.1.476 ↗ beta barrels › SH3 › SH3 › SH3 › PF30873 0.69 52.0 4.54e-01 100.0% 54.2%
4139090 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.68 49.0 5.28e-01 100.0% 89.1%
3979842 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.68 51.0 5.46e-01 100.0% 94.5%
5029405 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.68 49.0 5.24e-01 100.0% 89.1%
4214438 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 52.0 5.22e-01 100.0% 81.5%
4068333 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 51.0 5.07e-01 96.9% 78.5%
5000741 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.67 49.0 4.92e-01 100.0% 76.9%
2697704 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 44.0 4.45e-01 100.0% 67.7%
4248855 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 51.0 4.88e-01 100.0% 71.6%
5053906 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.66 51.0 5.27e-01 100.0% 88.3%
5080336 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 49.0 4.93e-01 100.0% 79.7%
5056826 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.66 50.0 4.99e-01 100.0% 80.0%
4971470 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.65 49.0 4.71e-01 100.0% 69.3%
3590658 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 57.0 5.57e-01 100.0% 91.4%
4432457 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 48.0 4.68e-01 100.0% 72.9%
4044269 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.65 48.0 4.71e-01 100.0% 72.9%
5028741 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 46.0 4.85e-01 96.9% 89.1%
4252954 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 49.0 4.78e-01 100.0% 75.7%
5050320 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.64 49.0 4.64e-01 100.0% 69.3%
4277213 4.1.1.431 ↗ beta barrels › SH3 › SH3 › SH3 › PF27152 0.64 46.0 4.48e-01 98.4% 68.6%
4459365 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 50.0 4.71e-01 100.0% 68.8%
4226849 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 49.0 4.57e-01 100.0% 66.3%
4071824 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.64 51.0 4.86e-01 100.0% 74.7%
4093911 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 48.0 4.62e-01 100.0% 70.7%
3954254 4.1.1.387 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Rv0428c 0.63 49.0 4.90e-01 100.0% 84.6%
4979291 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.63 48.0 4.58e-01 100.0% 70.7%
4157193 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 47.0 4.62e-01 100.0% 75.7%
5024227 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 50.0 5.03e-01 100.0% 90.5%
5042330 4203.1.1.0 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.61 48.0 4.72e-01 87.5% 90.0%
5062120 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 54.0 4.58e-01 100.0% 67.6%
4982354 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.60 49.0 4.92e-01 100.0% 89.2%
4554867 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 46.0 4.62e-01 100.0% 81.5%
3420348 4.1.1.306 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.60 40.0 4.29e-01 100.0% 81.8%
5048974 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 52.0 4.32e-01 100.0% 55.5%
4083915 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 48.0 4.57e-01 100.0% 76.0%
4120629 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 46.0 4.41e-01 100.0% 73.3%
4042520 2008.1.1.15 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N 0.59 47.0 3.25e-01 89.1% 42.2%
4158712 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 45.0 4.45e-01 100.0% 77.1%
3711668 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.59 50.0 4.49e-01 96.9% 86.7%
5049481 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 43.0 3.50e-01 79.7% 69.9%
4933648 4203.1.1.0 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.58 47.0 4.72e-01 92.2% 93.8%
4284778 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 47.0 4.48e-01 100.0% 77.3%
3722424 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.58 52.0 4.45e-01 100.0% 82.0%
3554026 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.57 43.0 4.40e-01 100.0% 86.7%
3571636 206.1.3.35 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DUF5565 0.57 43.0 3.03e-01 85.9% 82.8%
5061147 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 50.0 4.40e-01 100.0% 67.4%
5053225 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 50.0 4.30e-01 100.0% 68.0%
4024913 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 37.0 3.77e-01 100.0% 69.2%
4026486 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 44.0 3.69e-01 89.1% 92.2%
3649741 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.55 38.0 3.68e-01 100.0% 62.7%
5059830 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.55 48.0 4.33e-01 100.0% 74.4%
3173941 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 38.0 3.32e-01 100.0% 49.0%
2427475 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 38.0 3.76e-01 100.0% 73.1%
4275696 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.52 42.0 3.42e-01 100.0% 45.4%
3682917 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.52 37.0 2.70e-01 76.6% 32.0%
3751173 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.52 41.0 3.94e-01 92.2% 94.7%
3607779 247.1.1.16 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_6 0.51 40.0 2.56e-01 87.5% 53.7%
3430929 198.1.1.4 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF3456 0.50 36.0 2.80e-01 76.6% 98.0%
4028644 5.1.5.54 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_NOL10_N 0.50 41.0 2.48e-01 89.1% 13.9%
3502290 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 35.0 3.64e-01 98.4% 81.7%