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NC_055822.1__YP_010104934.1__KNU80_gp095__00170

Bact-Vir

NC_055822.1__YP_010104934.1__KNU80_gp095__00170

Identity

Accession:
NC_055822 ↗
Kingdom:
phage

Quality

83.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stanwilliamsviridae› Samistivirus› Streptomyces_phage_Daubenski

TaxID: 2653725

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-67
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.69 50.0 4.93e-01 100.0% 73.1%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.67 54.0 5.10e-01 98.4% 72.4%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.64 49.0 4.68e-01 95.2% 69.7%
4njcA00 3.10.20.730 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like 0.62 41.0 4.17e-01 76.2% 70.0%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 43.0 3.61e-01 74.6% 47.7%
1fm2B03 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.60 35.0 3.52e-01 73.0% 53.0%
6rupA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 42.0 3.51e-01 74.6% 47.7%
2bs2B01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.59 53.0 4.45e-01 100.0% 96.2%
1vwxS01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.59 48.0 4.67e-01 98.4% 81.7%
4eziA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 49.0 3.30e-01 100.0% 39.7%
2cuwA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.58 50.0 4.63e-01 100.0% 88.0%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.58 42.0 3.60e-01 98.4% 45.9%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.58 42.0 3.81e-01 95.2% 54.2%
1kf6B01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.57 50.0 4.30e-01 100.0% 97.1%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 33.0 2.86e-01 90.5% 34.6%
3kwlA01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.56 50.0 4.37e-01 100.0% 92.8%
4mpoB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.56 42.0 3.29e-01 84.1% 79.1%
1p1hB01 3.30.2360.10 Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain 0.56 39.0 2.81e-01 73.0% 59.7%
3wnoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 48.0 4.17e-01 100.0% 77.0%
3akoD00 6.20.160.10 Special › Other non-globular › HSP40/DNAj peptide-binding domain › 0.55 37.0 3.58e-01 73.0% 59.2%
6nvxB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.55 35.0 3.33e-01 74.6% 51.9%
4wksC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.54 34.0 3.24e-01 73.0% 52.0%
2xskA00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 41.0 3.65e-01 100.0% 55.8%
4a18X01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 47.0 4.44e-01 100.0% 79.7%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.54 45.0 3.82e-01 100.0% 52.9%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.54 43.0 3.66e-01 98.4% 52.3%
1h7zA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.53 45.0 3.30e-01 100.0% 38.2%
1f8vC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 40.0 2.56e-01 81.0% 26.7%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.53 44.0 3.57e-01 100.0% 74.3%
3w1hA01 3.90.1150.110 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.52 40.0 2.92e-01 85.7% 36.0%
3cjlA00 3.10.20.850 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 0.52 36.0 3.31e-01 74.6% 65.9%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.52 45.0 3.55e-01 100.0% 74.6%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.52 43.0 3.02e-01 100.0% 40.6%
3waiA02 2.60.40.3390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 37.0 3.37e-01 93.7% 53.8%
2nytD00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.51 41.0 3.08e-01 100.0% 33.0%
5ib9A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.51 43.0 2.86e-01 98.4% 34.4%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 42.0 3.71e-01 93.7% 96.9%
7sxqA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 42.0 2.90e-01 96.8% 36.3%
3f6zB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.51 42.0 3.87e-01 90.5% 100.0%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4990637 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.68 56.0 5.11e-01 100.0% 68.7%
3436318 230.5.1.0 ↗ a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain 0.68 58.0 5.08e-01 93.7% 67.7%
5747 4007.1.1.1 ↗ a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg 0.67 44.0 4.67e-01 100.0% 79.6%
3517068 3115.1.1.6 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.66 49.0 4.93e-01 96.8% 78.5%
3649881 67.1.1.1 ↗ beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C 0.66 54.0 4.95e-01 100.0% 68.2%
5058702 230.5.1.0 ↗ a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain 0.65 54.0 4.23e-01 92.1% 53.3%
3215667 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.65 46.0 3.73e-01 74.6% 45.0%
4084879 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.64 55.0 4.96e-01 100.0% 69.4%
3200375 101.1.2.569 ↗ alpha arrays › HTH › HTH › winged helix domain › PF28722 0.64 48.0 3.10e-01 87.3% 18.2%
3700104 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.64 57.0 4.69e-01 100.0% 94.8%
3892842 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.64 50.0 5.03e-01 100.0% 83.1%
3739811 67.1.1.1 ↗ beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C 0.64 52.0 4.72e-01 100.0% 65.9%
3995685 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.63 45.0 3.75e-01 74.6% 48.6%
3611850 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 55.0 4.62e-01 96.8% 95.2%
3627108 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 56.0 4.80e-01 100.0% 96.0%
3639466 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.60 44.0 3.42e-01 79.4% 53.8%
3874464 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.60 50.0 3.14e-01 100.0% 16.6%
3249352 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.57 43.0 3.43e-01 81.0% 60.8%
223860 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 50.0 4.40e-01 100.0% 94.7%
4996027 304.139.1.2 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.56 47.0 3.19e-01 96.8% 46.5%
3510040 3115.3.1.2 ↗ a+b two layers › GP2-like › P56 › P56 › DUF2922 0.56 49.0 4.55e-01 98.4% 85.0%
4933294 230.1.1.5 ↗ a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.55 42.0 3.54e-01 90.5% 92.0%
5016528 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 48.0 3.98e-01 100.0% 79.1%
3873771 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.55 38.0 3.22e-01 73.0% 47.3%
4939678 11.1.1.138 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NPCBM_assoc 0.54 47.0 3.91e-01 100.0% 80.9%
3943298 2011.1.1.8 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.54 45.0 2.98e-01 100.0% 34.4%
4029824 2484.1.1.20 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.53 45.0 3.04e-01 100.0% 32.5%
3633076 1.1.1.30 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › PF30863 0.53 38.0 3.32e-01 93.7% 46.7%
3639274 261.1.1.1 ↗ a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT 0.53 36.0 2.16e-01 73.0% 11.3%
4971338 512.1.1.2 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.53 38.0 3.30e-01 90.5% 46.4%
3225234 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 46.0 3.83e-01 100.0% 86.8%
3902169 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 43.0 3.61e-01 100.0% 83.2%
1755887 4956.1.1.0 ↗ a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.52 36.0 3.57e-01 73.0% 78.8%
4004108 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.52 39.0 2.76e-01 88.9% 94.4%
3264178 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.51 35.0 2.80e-01 73.0% 52.1%
4995758 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.51 43.0 3.96e-01 96.8% 84.7%
3393352 385.1.1.1 ↗ few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › Cys_knot 0.51 43.0 3.61e-01 100.0% 95.8%