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NC_055828.1__YP_010105580.1__KNU86_gp68__00068
Bact-VirNC_055828.1__YP_010105580.1__KNU86_gp68__00068
Identity
- Accession:
- NC_055828 ↗
- Kingdom:
- phage
Quality
77.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Crassvirales›
Intestiviridae›
Jahgtovirus›
Bacteroides_phage_crAss002
TaxID: 2709317
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 24-119
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1bkbA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.79 | 49.0 | 5.90e-01 | 100.0% | 93.8% |
| 3a5zD02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.78 | 49.0 | 5.85e-01 | 100.0% | 95.3% |
| 1uebA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.78 | 48.0 | 5.81e-01 | 100.0% | 95.2% |
| 1u0lA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.77 | 49.0 | 5.90e-01 | 100.0% | 96.9% |
| 3d31A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.76 | 37.0 | 5.23e-01 | 100.0% | 100.0% |
| 2eifA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.75 | 45.0 | 5.53e-01 | 100.0% | 98.3% |
| 1t9hA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.74 | 48.0 | 5.47e-01 | 100.0% | 87.7% |
| 1ybyA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.73 | 46.0 | 5.47e-01 | 100.0% | 95.3% |
| 2id0A02 | 2.40.50.640 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.73 | 49.0 | 5.61e-01 | 100.0% | 91.8% |
| 2r7dA03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.72 | 44.0 | 5.44e-01 | 100.0% | 98.3% |
| 1b9mB02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.72 | 39.0 | 4.44e-01 | 95.8% | 70.8% |
| 1oxxK02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.69 | 33.0 | 4.68e-01 | 81.2% | 100.0% |
| 2wfwA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.68 | 40.0 | 4.88e-01 | 100.0% | 96.6% |
| 2yyzA02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.68 | 36.0 | 4.44e-01 | 100.0% | 84.5% |
| 3go5A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.67 | 44.0 | 4.84e-01 | 97.9% | 82.3% |
| 1luzA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 48.0 | 5.08e-01 | 100.0% | 84.7% |
| 1wi5A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.65 | 47.0 | 5.17e-01 | 97.9% | 94.7% |
| 2cqoA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.65 | 50.0 | 5.09e-01 | 100.0% | 83.7% |
| 4da2A01 | 2.40.50.580 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.65 | 42.0 | 4.54e-01 | 100.0% | 79.7% |
| 3fvqA03 | 2.40.50.470 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.65 | 34.0 | 4.25e-01 | 89.6% | 84.5% |
| 4pmwA04 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.62 | 54.0 | 5.58e-01 | 97.9% | 100.0% |
| 1b3qB03 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.61 | 35.0 | 4.04e-01 | 97.9% | 77.9% |
| 1jjgA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 42.0 | 4.20e-01 | 99.0% | 67.6% |
| 3a54A01 | 2.40.50.340 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.60 | 41.0 | 4.27e-01 | 100.0% | 76.7% |
| 2z4hA02 | 2.40.50.540 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NlpE, C-terminal domain | 0.58 | 43.0 | 4.52e-01 | 100.0% | 87.2% |
| 3d1cA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 35.0 | 2.69e-01 | 70.8% | 42.4% |
| 1y56A02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 38.0 | 2.97e-01 | 80.2% | 62.2% |
| 2ywlA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 34.0 | 2.90e-01 | 74.0% | 39.0% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4926911 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.81 | 45.0 | 5.09e-01 | 99.0% | 70.7% |
| 3388275 | 2.1.1.281 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_RNR_2nd | 0.79 | 45.0 | 4.97e-01 | 100.0% | 68.8% |
| 4000394 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.79 | 51.0 | 5.88e-01 | 100.0% | 90.0% |
| 5056707 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.79 | 43.0 | 5.57e-01 | 97.9% | 94.5% |
| 4670334 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.78 | 50.0 | 5.93e-01 | 100.0% | 95.4% |
| 4161636 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.77 | 49.0 | 5.78e-01 | 100.0% | 95.4% |
| 4039724 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.77 | 48.0 | 5.69e-01 | 100.0% | 93.8% |
| 4934441 | 2.1.1.13 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a | 0.76 | 47.0 | 5.59e-01 | 100.0% | 92.2% |
| 3603358 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.76 | 45.0 | 5.45e-01 | 100.0% | 93.3% |
| 3222225 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.76 | 48.0 | 5.75e-01 | 100.0% | 95.4% |
| 3629514 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.75 | 47.0 | 5.11e-01 | 100.0% | 76.2% |
| 3964318 | 2.1.1.88 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSD2 | 0.75 | 50.0 | 5.61e-01 | 100.0% | 88.0% |
| 4069469 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.74 | 50.0 | 5.00e-01 | 100.0% | 67.0% |
| 2129748 | 2.1.1.88 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSD2 | 0.74 | 48.0 | 4.93e-01 | 100.0% | 68.1% |
| 3235466 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.74 | 46.0 | 5.29e-01 | 99.0% | 87.1% |
| 4046580 | 2.1.1.78 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PCB_OB | 0.73 | 57.0 | 5.37e-01 | 100.0% | 69.6% |
| 4140237 | 2.1.1.88 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSD2 | 0.72 | 48.0 | 5.02e-01 | 100.0% | 73.3% |
| 4168836 | 2.1.1.10 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP | 0.72 | 47.0 | 5.36e-01 | 100.0% | 91.4% |
| 4054958 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.72 | 49.0 | 5.05e-01 | 100.0% | 74.4% |
| 4246562 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.72 | 49.0 | 5.00e-01 | 100.0% | 71.6% |
| 3227102 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.72 | 46.0 | 5.23e-01 | 100.0% | 88.6% |
| 4360971 | 2.1.1.293 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF27162 | 0.69 | 45.0 | 5.35e-01 | 100.0% | 100.0% |
| 3386881 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.69 | 45.0 | 4.66e-01 | 97.9% | 71.1% |
| 3887538 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.67 | 52.0 | 4.45e-01 | 100.0% | 53.5% |
| 3931737 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.67 | 50.0 | 5.43e-01 | 99.0% | 92.5% |
| 5030261 | 2.1.1.363 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF2101 | 0.67 | 43.0 | 5.15e-01 | 97.9% | 98.4% |
| 3603020 | 2.14.1.1 ↗ | beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like › HupF_HypC | 0.66 | 38.0 | 4.73e-01 | 99.0% | 100.0% |
| 4518886 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.66 | 46.0 | 4.60e-01 | 99.0% | 70.0% |
| 3983892 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.65 | 53.0 | 4.97e-01 | 100.0% | 72.2% |
| 3969437 | 2.20.1.0 ↗ | beta barrels › OB-fold › NlpE C-terminal domain › NlpE C-terminal domain | 0.63 | 48.0 | 4.96e-01 | 100.0% | 85.6% |
| 4025781 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 34.0 | 4.20e-01 | 79.2% | 85.0% |
| 4271291 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 40.0 | 4.53e-01 | 99.0% | 87.1% |
| 4387033 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.62 | 50.0 | 5.19e-01 | 99.0% | 93.3% |
| 4674864 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 50.0 | 5.12e-01 | 99.0% | 89.2% |
| 336 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 42.0 | 4.20e-01 | 99.0% | 67.6% |
| 4142920 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.60 | 50.0 | 4.97e-01 | 100.0% | 86.0% |
| 1106142 | 2.20.1.1 ↗ | beta barrels › OB-fold › NlpE C-terminal domain › NlpE C-terminal domain › NlpE_C | 0.59 | 44.0 | 4.40e-01 | 100.0% | 77.3% |
| 4000809 | 2.1.1.89 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dis3l2_C_term | 0.59 | 52.0 | 5.23e-01 | 96.9% | 97.9% |
| 3704274 | 2.1.1.39 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNA_pol_Rbc25 | 0.57 | 51.0 | 4.42e-01 | 100.0% | 95.3% |
| 3614876 | 2.1.1.39 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNA_pol_Rbc25 | 0.56 | 51.0 | 4.80e-01 | 100.0% | 93.0% |
| 3344668 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.55 | 45.0 | 4.24e-01 | 100.0% | 73.3% |
| 4352413 | 1146.1.1.1 ↗ | few secondary structure elements › CRISPR-associated endonuclease C2c1 C-terminal domain › CRISPR-associated endonuclease C2c1 C-terminal domain › CRISPR-associated endonuclease C2c1 C-terminal domain › C2c1_Nuc-II | 0.54 | 37.0 | 3.84e-01 | 99.0% | 75.6% |
| 4943610 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.53 | 49.0 | 4.38e-01 | 99.0% | 96.9% |
| 3969441 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.51 | 47.0 | 4.11e-01 | 100.0% | 82.9% |
| 3246362 | 209.1.1.0 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like | 0.51 | 39.0 | 3.28e-01 | 82.3% | 90.9% |
| 4995318 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.50 | 47.0 | 4.35e-01 | 99.0% | 99.2% |