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NC_055832.1__YP_010106269.1__KNU90_gp099__00028

Bact-Vir

NC_055832.1__YP_010106269.1__KNU90_gp099__00028

Identity

Accession:
NC_055832 ↗
Kingdom:
phage

Quality

65.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Crassvirales› Steigviridae› Wulfhauvirus› Bacteroides_phage_DAC15

TaxID: 2710495

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-70
PDB
Domain cluster: rep: term1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00090__D44-109
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kw2A01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.66 51.0 5.16e-01 84.3% 89.7%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.66 40.0 4.34e-01 72.9% 75.4%
1nxzA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.65 53.0 5.25e-01 88.6% 90.3%
1vhkA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.65 50.0 4.98e-01 84.3% 90.4%
4dt4A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 40.0 4.39e-01 72.9% 78.9%
4lb0A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.64 49.0 3.77e-01 84.3% 44.5%
5dm6S01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.63 47.0 4.47e-01 81.4% 98.8%
1y1uA04 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.63 43.0 4.06e-01 82.9% 57.5%
3fpfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 45.0 3.07e-01 77.1% 33.7%
5bxyA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 49.0 3.87e-01 87.1% 50.6%
1feuA01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.62 49.0 4.54e-01 88.6% 98.9%
1i3zA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.62 42.0 3.76e-01 85.7% 48.5%
1z85A01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.61 47.0 4.81e-01 84.3% 89.6%
6r77A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.61 47.0 3.64e-01 85.7% 44.6%
4j3cA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.59 45.0 4.72e-01 84.3% 92.2%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.59 42.0 3.78e-01 75.7% 94.0%
3mqqB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 43.0 3.73e-01 80.0% 50.8%
3mxlA02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.59 46.0 4.14e-01 88.6% 94.2%
8be0A01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.58 41.0 3.07e-01 75.7% 37.2%
4o1gA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.58 44.0 2.89e-01 100.0% 18.3%
1ayaA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 39.0 3.59e-01 88.6% 50.5%
2g6gA02 2.40.240.50 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Barwin-like endoglucanases 0.58 44.0 3.25e-01 84.3% 100.0%
3ctkA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.56 44.0 3.40e-01 87.1% 44.3%
1a79A01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.56 41.0 3.70e-01 78.6% 73.0%
2g5dA02 2.40.240.50 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Barwin-like endoglucanases 0.56 43.0 3.55e-01 84.3% 100.0%
4za3A01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.56 43.0 3.34e-01 84.3% 46.6%
3ktzA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.56 45.0 3.42e-01 88.6% 46.4%
5c40B00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.56 48.0 3.19e-01 100.0% 22.4%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.56 39.0 3.23e-01 75.7% 41.3%
3mvgA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.56 44.0 3.38e-01 87.1% 46.6%
3h5kA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.56 45.0 3.35e-01 88.6% 42.9%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 34.0 3.45e-01 80.0% 60.3%
5mp7A02 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 38.0 3.16e-01 72.9% 37.5%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 33.0 3.01e-01 94.3% 45.1%
4da2A02 3.40.1350.60 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.55 38.0 3.03e-01 72.9% 54.6%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 34.0 3.45e-01 77.1% 63.8%
1nioA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.54 43.0 3.30e-01 87.1% 46.3%
5lvxC02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 40.0 3.50e-01 80.0% 70.4%
4nj5A02 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.54 41.0 2.79e-01 84.3% 64.4%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.54 41.0 3.66e-01 88.6% 74.8%
3bfmA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 42.0 3.19e-01 87.1% 64.2%
2gjwC01 3.40.1350.150 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.53 38.0 3.13e-01 80.0% 39.3%
5khaB01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.52 43.0 3.07e-01 100.0% 29.6%
2hqsA01 3.40.50.10070 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TolB, N-terminal domain 0.51 40.0 3.32e-01 90.0% 68.3%
1k8fA00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.51 44.0 3.47e-01 100.0% 79.0%
6mlyB01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 44.0 3.04e-01 100.0% 47.7%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.50 44.0 3.60e-01 100.0% 90.5%
6pzjA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 42.0 3.42e-01 100.0% 57.4%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3968161 1.1.9.20 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.66 53.0 5.38e-01 88.6% 92.9%
3589428 1.1.9.20 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.66 52.0 5.27e-01 85.7% 91.4%
137832 1.1.9.20 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.66 51.0 5.16e-01 84.3% 89.7%
3635387 2492.1.1.11 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NPL4 0.65 57.0 4.03e-01 100.0% 65.2%
4340002 1.1.9.20 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.65 52.0 5.26e-01 88.6% 92.9%
3272897 2492.1.1.11 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NPL4 0.65 57.0 4.11e-01 100.0% 57.6%
3960524 7550.1.1.0 ↗ a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain 0.65 44.0 3.58e-01 70.0% 54.6%
4645759 286.1.1.4 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.65 54.0 3.93e-01 92.9% 40.5%
4049740 1.1.9.20 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.65 50.0 4.96e-01 85.7% 89.3%
2528374 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.64 41.0 3.99e-01 72.9% 58.4%
3263053 1.1.9.20 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.64 50.0 5.03e-01 85.7% 92.9%
3938726 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.64 44.0 3.89e-01 90.0% 48.6%
4358637 1.1.9.20 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.63 49.0 4.95e-01 85.7% 92.9%
3989371 1.1.9.20 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.63 48.0 5.00e-01 84.3% 92.3%
3289974 1.1.9.20 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.62 50.0 5.01e-01 88.6% 94.3%
3415161 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.62 44.0 2.99e-01 94.3% 19.3%
4285300 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.62 50.0 4.57e-01 90.0% 100.0%
3959879 1.1.9.20 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.62 49.0 4.94e-01 88.6% 94.3%
4979796 7518.1.1.0 ↗ a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like 0.62 49.0 3.52e-01 88.6% 74.4%
4537516 1.1.9.20 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.61 49.0 4.83e-01 88.6% 89.3%
3219023 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.61 42.0 3.81e-01 90.0% 51.0%
1157725 1.1.9.20 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.61 47.0 4.83e-01 84.3% 90.9%
1115584 286.1.1.4 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.61 50.0 3.76e-01 92.9% 42.4%
4524276 286.1.1.4 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.61 50.0 3.25e-01 92.9% 23.3%
4955882 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.60 51.0 4.15e-01 100.0% 50.8%
4871885 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.59 40.0 3.68e-01 88.6% 50.5%
3212241 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.59 41.0 3.51e-01 90.0% 43.3%
3329729 5104.1.1.3 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 0.59 51.0 4.07e-01 98.6% 81.4%
3628445 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.58 44.0 3.14e-01 84.3% 94.3%
3714360 4052.1.1.0 ↗ beta complex topology › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like 0.58 46.0 4.19e-01 90.0% 90.0%
3648449 1.1.9.20 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.58 48.0 4.50e-01 94.3% 92.2%
3786050 2008.2.1.2 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › Sen15 0.58 43.0 3.79e-01 80.0% 77.1%
3546715 5104.1.1.3 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 0.57 50.0 4.03e-01 98.6% 81.4%
4940399 5104.1.1.1 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.57 49.0 4.18e-01 98.6% 79.7%
4011184 11.1.4.92 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › VPS13_VAB 0.57 40.0 3.49e-01 74.3% 91.8%
5079598 5104.1.1.0 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.57 49.0 4.15e-01 98.6% 73.9%
3399218 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.56 42.0 3.10e-01 84.3% 92.9%
3179508 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.55 46.0 2.99e-01 100.0% 49.4%
3364928 2007.2.3.9 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase 0.55 39.0 2.53e-01 75.7% 92.0%
3923767 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.55 37.0 3.52e-01 72.9% 62.2%
3380077 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 39.0 2.44e-01 75.7% 22.5%
4991587 5104.1.1.0 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.53 45.0 3.76e-01 98.6% 61.5%
3459886 70.3.1.1 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.53 39.0 2.77e-01 81.4% 61.5%
4956984 5104.1.1.1 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.53 46.0 4.04e-01 98.6% 74.3%
3942618 11.1.4.94 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF3304 0.53 39.0 3.33e-01 84.3% 74.8%
3969646 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.53 45.0 3.00e-01 100.0% 28.7%
3637723 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.52 46.0 2.88e-01 100.0% 43.0%
4931043 5104.1.1.1 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.52 39.0 3.56e-01 85.7% 80.0%
4040865 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.52 40.0 2.60e-01 88.6% 72.6%
3914305 70.3.1.1 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.52 40.0 2.87e-01 85.7% 76.7%
5035333 1.1.4.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C 0.52 43.0 3.91e-01 98.6% 86.0%
4948545 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.51 41.0 3.09e-01 100.0% 33.7%
4989549 5104.1.1.1 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.51 42.0 3.68e-01 98.6% 74.8%
4297022 5.1.3.26 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_2 0.50 43.0 2.68e-01 100.0% 68.9%
3240882 2492.1.1.11 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NPL4 0.50 41.0 2.95e-01 100.0% 62.7%
3357867 7579.1.1.14 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.50 40.0 2.85e-01 90.0% 59.6%
D2 medium residues 82-229
PDB
Domain cluster: rep: OQ221560.1__WCS67416.1__PhiCrAssBcn25_35__00035__D171-281
D3 medium residues 230-393
PDB
D4 medium residues 418-456_470-507
PDB