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NC_055832.1__YP_010106303.1__KNU90_gp065__00062

Bact-Vir

NC_055832.1__YP_010106303.1__KNU90_gp065__00062

Identity

Accession:
NC_055832 ↗
Kingdom:
phage

Quality

73.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Crassvirales› Steigviridae› Wulfhauvirus› Bacteroides_phage_DAC15

TaxID: 2710495

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-87
PDB
Domain cluster: rep: BML_08182015_6_5m_scaffold_7_prodigal-single.1__X__X__00200__D2-69
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h2dB00 3.40.1550.10 Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like 0.66 60.0 4.72e-01 100.0% 75.3%
1konA02 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.66 51.0 4.85e-01 82.9% 87.8%
1mw7A02 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.65 50.0 4.78e-01 81.6% 97.7%
3hm4A00 3.40.1550.10 Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like 0.63 57.0 4.53e-01 100.0% 74.5%
1xkoB00 3.40.1550.10 Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like 0.62 56.0 4.41e-01 100.0% 71.7%
2ch5A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 42.0 3.46e-01 71.1% 98.6%
2ok5A02 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 44.0 3.19e-01 75.0% 94.5%
2hp7A00 3.40.1550.10 Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like 0.61 54.0 4.16e-01 100.0% 68.2%
1i0rA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 48.0 3.80e-01 88.2% 50.9%
2z3gB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.60 44.0 3.80e-01 81.6% 48.0%
1xb2B02 3.30.479.20 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › Elongation factor Ts, dimerisation domain 0.59 46.0 3.89e-01 82.9% 85.1%
4xrtA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 35.0 2.87e-01 96.1% 32.4%
4eg9A00 2.50.20.40 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.57 44.0 3.18e-01 84.2% 86.1%
4g1lA01 2.70.20.50 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Viral matrix protein, N-terminal domain 0.57 43.0 3.54e-01 86.8% 78.5%
3stjA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 46.0 4.47e-01 92.1% 89.4%
1dleB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 40.0 3.29e-01 77.6% 62.7%
1iwlA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 38.0 2.96e-01 73.7% 84.7%
3axgK00 3.60.70.12 Alpha Beta › 4-Layer Sandwich › L-amino peptidase D-ALA esterase/amidase › L-amino peptidase D-ALA esterase/amidase 0.53 44.0 2.98e-01 98.7% 86.0%
3t8qB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 40.0 3.54e-01 82.9% 70.4%
4fd7A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 35.0 2.58e-01 71.1% 75.1%
3hlkA01 2.60.40.2240 Mainly Beta › Sandwich › Immunoglobulin-like › Acyl-CoA thioester hydrolase/BAAT N-terminal domain 0.52 40.0 3.50e-01 90.8% 85.2%
3bgyA00 3.20.100.10 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › mRNA triphosphatase Cet1-like 0.52 38.0 2.81e-01 81.6% 50.0%
4ca1B02 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.51 46.0 3.85e-01 100.0% 74.2%
5fmgF00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.51 40.0 2.91e-01 86.8% 82.6%
1f0cA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 37.0 3.28e-01 78.9% 56.8%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 38.0 3.22e-01 85.5% 49.0%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 35.0 2.44e-01 73.7% 29.0%
1aj6A00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.50 35.0 2.64e-01 73.7% 87.1%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3283450 3844.2.1.1 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.73 33.0 2.25e-01 96.1% 12.3%
3857670 633.23.1.35 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Clarin-2 0.73 52.0 3.73e-01 75.0% 73.5%
3553670 11.1.6.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › UPA-FIIND 0.68 52.0 4.37e-01 84.2% 69.6%
4016088 821.1.1.3 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 0.66 52.0 4.71e-01 85.5% 83.8%
4487057 4007.1.1.1 ↗ a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg 0.66 53.0 5.01e-01 85.5% 95.6%
4313699 4007.1.1.1 ↗ a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg 0.66 55.0 4.98e-01 92.1% 86.7%
2713846 866.1.1.3 ↗ a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheX 0.66 60.0 4.75e-01 100.0% 77.9%
135350 866.1.1.3 ↗ a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheX 0.63 57.0 4.53e-01 100.0% 74.5%
4560889 11.1.6.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › UPA-FIIND 0.63 51.0 4.42e-01 92.1% 77.6%
4967805 230.4.1.1 ↗ a+b two layers › T-fold › ApbE-like › ApbE-like › ApbE 0.62 50.0 3.78e-01 88.2% 91.7%
3915866 11.1.6.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › UPA-FIIND 0.62 52.0 4.43e-01 97.4% 74.6%
3714422 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.61 43.0 3.11e-01 75.0% 80.4%
3553310 12.5.1.18 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › UPA-FIIND 0.61 52.0 4.47e-01 97.4% 76.0%
4176285 11.1.1.1032 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF2544 0.59 43.0 3.56e-01 76.3% 77.0%
3480696 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.59 43.0 4.20e-01 77.6% 92.9%
3718679 4252.1.1.10 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DUF2804 0.59 42.0 3.06e-01 76.3% 83.0%
3819875 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.57 42.0 2.77e-01 78.9% 93.9%
4311344 4252.1.1.13 ↗ beta barrels › AttH-like › AttH-like › AttH-like › PF27123 0.57 43.0 3.78e-01 81.6% 95.7%
3811693 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.56 42.0 2.83e-01 80.3% 96.9%
3601863 9.15.1.1 ↗ beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD 0.55 42.0 3.17e-01 81.6% 82.7%
4948114 325.1.6.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif 0.53 40.0 3.15e-01 81.6% 40.6%
3512548 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.53 43.0 3.18e-01 90.8% 86.0%
3615961 9.15.1.1 ↗ beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD 0.53 39.0 3.04e-01 80.3% 89.7%
5057532 101.1.2.893 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF2226 0.52 44.0 3.03e-01 94.7% 61.8%
4653627 4252.1.1.3 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DA_C 0.52 38.0 3.03e-01 80.3% 99.4%
3750158 9.15.1.1 ↗ beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD 0.52 38.0 2.98e-01 80.3% 86.3%
3797697 9.15.1.0 ↗ beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 0.51 37.0 2.95e-01 80.3% 88.3%
2756903 4252.1.1.3 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DA_C 0.51 37.0 3.00e-01 78.9% 99.4%
4667155 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.51 36.0 3.01e-01 72.4% 84.8%
3221153 9.15.1.1 ↗ beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD 0.51 37.0 2.84e-01 78.9% 88.6%