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NC_055834.1__YP_010106505.1__KNU92_gp127__00013

Bact-Vir

NC_055834.1__YP_010106505.1__KNU92_gp127__00013

Identity

Accession:
NC_055834 ↗
Kingdom:
phage

Quality

83.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vipetofemvirus› Enterococcus_phage_vipetofem

TaxID: 2719594

Cluster

View cluster (43 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 32-104
PDB
Domain cluster: rep: OP810509.1__WAK43900.1__IAPFLPAM_00040__00040__D27-100
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05521.19 best Phage_HCP 31.0 4.40e-07 100.0% 68.9%
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.73 65.0 5.87e-01 97.3% 76.5%
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.70 43.0 3.67e-01 97.3% 39.3%
3pnrA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.69 45.0 3.15e-01 100.0% 20.4%
3f3bA00 2.40.10.370 Mainly Beta › Beta Barrel › Thrombin, subunit H › Protein of unknown function DUF3599 0.68 61.0 5.15e-01 100.0% 61.7%
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.68 61.0 5.97e-01 100.0% 93.7%
4dqlB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.67 55.0 4.84e-01 100.0% 60.6%
1g5hA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.64 53.0 3.57e-01 93.2% 43.9%
2kcaA00 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.63 54.0 4.84e-01 100.0% 67.0%
2o8lA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 57.0 5.08e-01 100.0% 74.3%
3h7tA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 57.0 4.94e-01 100.0% 67.6%
6toaF01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.60 53.0 4.42e-01 100.0% 90.8%
5oj2B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 48.0 4.44e-01 90.4% 67.7%
3i3lA02 3.30.390.160 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.59 44.0 3.76e-01 82.2% 72.8%
1o0vA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 48.0 4.26e-01 94.5% 61.8%
1dq3A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.57 48.0 4.62e-01 100.0% 81.6%
2rhqB05 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.56 47.0 3.51e-01 95.9% 87.7%
7by6B04 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.56 47.0 3.40e-01 95.9% 90.0%
4f80A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 42.0 4.02e-01 95.9% 67.7%
7uvpA03 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.55 47.0 3.78e-01 94.5% 76.6%
3qt2A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 4.09e-01 97.3% 66.4%
3pcoB05 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 45.0 3.35e-01 94.5% 86.1%
3u83A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 3.97e-01 93.2% 65.3%
3fn2A00 3.30.2200.10 Alpha Beta › 2-Layer Sandwich › histidine kinase doma clostridium symbiosum atcc 14940 › histidine kinase doma clostridium symbiosum atcc 14940 0.54 43.0 3.89e-01 84.9% 78.4%
3ko2A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.52 45.0 3.57e-01 100.0% 49.7%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.52 46.0 3.05e-01 100.0% 43.0%
5azsA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.52 35.0 3.44e-01 72.6% 85.5%
4bqqB02 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.51 40.0 3.02e-01 86.3% 73.7%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 40.0 3.29e-01 87.7% 66.7%
2ky6A00 2.40.290.30 Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › Mediator complex subunit 25, ACID domain 0.51 44.0 3.45e-01 100.0% 71.1%
3i1iB01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 43.0 2.74e-01 94.5% 27.5%
2hb0A01 2.60.40.2520 Mainly Beta › Sandwich › Immunoglobulin-like › CFA/I fimbrial subunit E, adhesin domain 0.50 40.0 3.01e-01 91.8% 35.6%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5011662 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.82 76.0 5.87e-01 100.0% 72.0%
4260208 1.1.13.62 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF27197 0.78 72.0 6.32e-01 100.0% 99.0%
5017568 1.1.7.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.72 54.0 5.22e-01 97.3% 72.5%
4669352 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.70 64.0 5.55e-01 100.0% 79.1%
4948943 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.70 47.0 4.63e-01 100.0% 65.4%
3789214 1.1.7.25 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN 0.69 62.0 5.46e-01 100.0% 73.3%
3612373 109.4.1.438 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CHAT 0.66 39.0 2.71e-01 94.5% 19.5%
4989873 1.1.7.28 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.63 56.0 4.73e-01 97.3% 75.0%
5051927 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 57.0 4.80e-01 100.0% 76.7%
3251426 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.63 43.0 4.28e-01 95.9% 69.3%
5054262 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 49.0 4.57e-01 94.5% 67.8%
3561487 223.1.1.108 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › VGCC_alpha2, PF30670 0.61 36.0 2.16e-01 91.8% 8.0%
3255598 212.1.1.26 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › SMCHD1_S5 0.60 52.0 4.05e-01 100.0% 71.8%
3742193 314.1.1.9 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His 0.60 49.0 3.21e-01 91.8% 66.9%
3277508 11.1.1.793 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7743 0.60 48.0 4.34e-01 95.9% 64.0%
4077803 314.1.1.11 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.60 49.0 3.52e-01 93.2% 80.4%
3932167 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.59 50.0 3.26e-01 94.5% 23.0%
4972327 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.59 46.0 4.24e-01 83.6% 91.6%
3968270 3103.1.1.2 ↗ alpha arrays › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Phage_TAC_13 0.59 47.0 4.19e-01 90.4% 87.3%
4341249 314.1.1.11 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.58 47.0 3.44e-01 93.2% 82.2%
5056494 12.5.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.58 49.0 4.14e-01 91.8% 75.8%
3625604 11.1.1.178 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.57 47.0 4.24e-01 93.2% 63.8%
4526524 314.1.1.11 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.57 46.0 3.40e-01 93.2% 79.1%
4303858 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.57 46.0 3.63e-01 93.2% 79.4%
4937467 314.1.1.11 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.56 46.0 3.54e-01 95.9% 87.9%
2987714 212.1.1.17 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › EFG_IV 0.56 48.0 3.79e-01 94.5% 76.0%
3825541 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.55 44.0 3.98e-01 91.8% 60.9%
4256848 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.55 44.0 3.56e-01 93.2% 84.8%
3244973 11.1.1.673 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CUT_N 0.55 47.0 3.91e-01 94.5% 54.6%
3765989 223.1.1.120 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1, VWA_N, PF30670 0.55 46.0 3.07e-01 94.5% 42.3%
3436820 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.55 45.0 3.44e-01 90.4% 72.4%
3418966 5.1.4.32 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.54 40.0 2.41e-01 94.5% 11.8%
3216926 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 47.0 3.78e-01 100.0% 65.3%
3210165 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.54 46.0 3.52e-01 100.0% 43.2%
4930696 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.54 46.0 3.66e-01 95.9% 64.0%
3711130 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.54 44.0 3.38e-01 94.5% 68.6%
3397417 223.1.1.98 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF30670 0.54 42.0 3.59e-01 87.7% 92.8%
3869669 223.1.1.98 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF30670 0.53 42.0 3.84e-01 87.7% 93.0%
1914574 3488.1.1.3 ↗ a+b three layers › Putative sensor histidine kinase domain › Putative sensor histidine kinase domain › Putative sensor histidine kinase domain › PF30670 0.53 43.0 3.46e-01 89.0% 87.6%
3921641 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 45.0 3.85e-01 100.0% 60.0%
2116144 223.1.1.98 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF30670 0.52 42.0 3.42e-01 89.0% 87.6%
135505 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.52 41.0 2.70e-01 89.0% 71.6%
3755260 223.1.1.102 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › VWA_N, PF30670 0.52 42.0 2.77e-01 90.4% 33.0%
4995673 230.5.1.1 ↗ a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.52 44.0 3.74e-01 93.2% 81.7%
4973794 212.1.1.18 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Lon_C 0.52 41.0 3.76e-01 90.4% 73.3%
3788029 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.52 42.0 2.97e-01 90.4% 35.8%
3489060 223.1.1.98 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF30670 0.52 41.0 3.59e-01 86.3% 95.5%
3580851 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.51 42.0 3.09e-01 90.4% 40.0%
3286469 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.51 44.0 3.31e-01 95.9% 57.7%
3482585 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 39.0 3.35e-01 87.7% 83.1%
3641734 3887.2.1.1 ↗ a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.50 43.0 3.59e-01 94.5% 62.9%
3707385 2011.1.1.8 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.50 44.0 2.77e-01 100.0% 50.1%
3344404 220.1.1.182 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › RDR6_2nd 0.50 39.0 3.11e-01 90.4% 49.1%