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NC_055834.1__YP_010106511.1__KNU92_gp121__00019

Bact-Vir

NC_055834.1__YP_010106511.1__KNU92_gp121__00019

Identity

Accession:
NC_055834 ↗
Kingdom:
phage

Quality

53.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-127
PDB
D2 medium residues 128-278
PDB
D3 medium residues 308-423_549-580
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10145.15 best PhageMin_Tail 47.8 2.30e-12 83.1% 48.8%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2j6lA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.57 43.0 3.36e-01 77.0% 69.3%
3rh9A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.57 42.0 3.37e-01 77.0% 70.6%
1ez0B01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.56 42.0 3.27e-01 77.0% 71.5%
1t90A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.56 41.0 3.36e-01 77.0% 70.4%
7e4mA01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.55 41.0 3.43e-01 77.0% 90.2%
7dkaA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 38.0 3.49e-01 94.6% 53.3%
3k9dA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.53 39.0 3.31e-01 76.4% 77.5%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3981280 159.1.2.6 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail 0.70 57.0 5.82e-01 86.5% 88.3%
4032310 159.1.2.6 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail 0.70 52.0 5.24e-01 77.7% 76.7%
4962547 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.63 51.0 4.06e-01 98.0% 44.7%
5044982 5076.2.1.18 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › DUF6159 0.57 43.0 3.64e-01 77.7% 98.8%
D4 medium residues 424-548
PDB
D5 medium residues 714-828
PDB
D6 medium residues 877-1005
PDB