←Back to structures

NC_055834.1__YP_010106534.1__KNU92_gp098__00042

Bact-Vir

NC_055834.1__YP_010106534.1__KNU92_gp098__00042

Identity

Accession:
NC_055834 ↗
Kingdom:
phage

Quality

79.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vipetofemvirus› Enterococcus_phage_vipetofem

TaxID: 2719594

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 170-236
PDB
Domain cluster: rep: OQ981145.1__WJZ46647.1__X__00184__D1-66
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4yibA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.84 77.0 5.66e-01 98.5% 72.8%
4c5fA02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.82 75.0 5.47e-01 98.5% 83.3%
3bkhA02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.81 73.0 5.27e-01 100.0% 80.2%
1qsaA03 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.81 74.0 5.35e-01 100.0% 67.1%
6cfcA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.80 72.0 5.34e-01 98.5% 77.0%
2dqaA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.76 68.0 5.56e-01 100.0% 84.6%
1xsfA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.73 62.0 5.32e-01 95.5% 71.3%
3gwlA00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.57 42.0 3.64e-01 79.1% 77.4%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3279121 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.92 86.0 7.57e-01 100.0% 79.8%
4455133 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.83 70.0 6.33e-01 97.0% 68.2%
3166094 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.83 76.0 5.46e-01 98.5% 80.0%
3944103 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.82 75.0 5.39e-01 100.0% 67.8%
4530587 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.82 75.0 5.29e-01 98.5% 75.7%
3964630 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.82 76.0 5.56e-01 100.0% 51.2%
3385979 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.81 72.0 5.15e-01 98.5% 62.1%
4258903 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.80 74.0 5.41e-01 100.0% 81.8%
3979308 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.79 71.0 5.14e-01 98.5% 76.6%
3947473 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.79 72.0 5.46e-01 100.0% 68.7%
3582448 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.79 72.0 5.71e-01 100.0% 81.5%
4031083 235.1.1.14 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transglycosylas 0.75 70.0 6.53e-01 100.0% 92.5%
4009649 632.3.1.13 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › DUF1615 0.73 64.0 4.88e-01 98.5% 64.2%
3978932 235.1.1.35 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › DUF1615 0.73 64.0 4.58e-01 98.5% 73.7%
185214 235.1.1.14 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transglycosylas 0.72 63.0 5.77e-01 97.0% 88.6%
D2 medium residues 24-136
PDB
Domain cluster: representative