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NC_055838.1__YP_010106934.1__KNU96_gp43__00069

Bact-Vir

NC_055838.1__YP_010106934.1__KNU96_gp43__00069

Identity

Accession:
NC_055838 ↗
Kingdom:
phage

Quality

86.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Foxunavirus› Xanthomonas_phage_FoX5

TaxID: 2723901

Cluster

View cluster (16 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-101
PDB
Domain cluster: rep: OP186293.1__UVD36581.1__RCXUPER_163__00134__D32-101
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2es9A00 1.20.1290.30 Mainly Alpha › Up-down Bundle › AhpD-like › 0.70 51.0 4.57e-01 94.4% 55.0%
1sqgA01 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.65 57.0 4.59e-01 100.0% 66.0%
4fd4A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.63 57.0 4.04e-01 100.0% 73.1%
1z6oA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.60 48.0 3.50e-01 88.7% 64.6%
4ib4A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.59 42.0 2.86e-01 77.5% 86.3%
3n00A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.58 50.0 3.77e-01 98.6% 60.3%
5a0uA01 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.57 51.0 2.89e-01 100.0% 44.7%
1u89A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.56 41.0 3.42e-01 78.9% 47.5%
1xioA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.56 44.0 3.18e-01 87.3% 43.8%
1cnt200 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.56 42.0 3.48e-01 80.3% 83.8%
2vsgA02 1.10.470.10 Mainly Alpha › Orthogonal Bundle › Variant Surface Glycoprotein, subunit A; domain 2 › Variant Surface Glycoprotein, subunit A, domain 2 0.56 44.0 3.44e-01 87.3% 65.0%
6j8eA01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.55 37.0 3.34e-01 70.4% 77.4%
1aepA00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.55 48.0 3.78e-01 98.6% 75.2%
6tepC02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.55 46.0 3.54e-01 98.6% 87.8%
3e6sA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.54 48.0 3.71e-01 98.6% 56.0%
1v66A00 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.54 34.0 3.57e-01 93.0% 70.8%
1e1dA02 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.54 38.0 3.68e-01 76.1% 66.7%
1lb3A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.54 48.0 3.62e-01 98.6% 53.9%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.54 36.0 3.90e-01 71.8% 89.3%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.53 41.0 3.90e-01 85.9% 79.5%
1tt5C01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 45.0 3.06e-01 100.0% 85.0%
2vk9A04 1.10.274.80 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › 0.51 45.0 3.98e-01 100.0% 91.3%
4dkcB00 1.20.1250.80 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-34 0.51 42.0 3.27e-01 93.0% 93.1%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5037128 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.69 53.0 5.68e-01 83.1% 98.3%
4025126 192.27.1.0 ↗ alpha bundles › Long alpha-hairpin › Helical hairpin in putative tRNA methyltransferase › Helical hairpin in putative tRNA methyltransferase 0.68 50.0 3.98e-01 78.9% 51.0%
3547059 106.1.1.10 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › BCD_RFX 0.67 51.0 4.06e-01 84.5% 45.2%
3600346 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.67 48.0 3.05e-01 74.6% 20.9%
4627506 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.67 50.0 4.53e-01 78.9% 66.3%
3645559 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.67 48.0 4.49e-01 76.1% 74.4%
3394510 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.66 45.0 4.36e-01 70.4% 63.7%
4438504 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.64 49.0 5.11e-01 93.0% 90.8%
4935180 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.59 50.0 4.56e-01 97.2% 85.0%
3419377 1075.4.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.57 39.0 2.82e-01 70.4% 73.9%
5051839 601.28.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.57 46.0 4.43e-01 90.1% 81.2%
4029493 526.1.1.1 ↗ alpha bundles › ERO1-like › ERO1-like › ERO1-like › ERO1 0.56 51.0 3.23e-01 100.0% 49.2%
3733467 109.2.1.20 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_125 0.55 43.0 2.64e-01 88.7% 16.5%
4011916 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.55 41.0 3.98e-01 94.4% 70.0%
5071442 138.1.1.0 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain 0.55 45.0 3.92e-01 91.5% 65.5%
3317090 3758.1.1.0 ↗ alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins 0.54 44.0 3.00e-01 88.7% 81.2%
3506336 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.54 37.0 3.29e-01 73.2% 93.9%
4947470 150.1.1.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin 0.54 47.0 3.82e-01 97.2% 63.0%
3425364 1075.4.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.54 42.0 2.80e-01 88.7% 93.1%
4201591 166.1.1.1 ↗ alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.52 41.0 3.77e-01 88.7% 76.0%
56672 150.3.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine 0.52 40.0 3.26e-01 85.9% 81.5%
4144086 166.1.1.1 ↗ alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.52 40.0 3.68e-01 88.7% 71.0%