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NC_055841.1__YP_010107201.1__KNU99_gp059__00059
Bact-VirNC_055841.1__YP_010107201.1__KNU99_gp059__00059
Identity
- Accession:
- NC_055841 ↗
- Kingdom:
- phage
Quality
70.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pootjesviridae›
Heverleevirus›
Agrobacterium_phage_OLIVR5
TaxID: 2723773
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 20-75
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7vw6B01 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.68 | 51.0 | 4.91e-01 | 100.0% | 70.1% |
| 2blfB01 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.59 | 45.0 | 4.43e-01 | 96.4% | 81.0% |
| 153lA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.58 | 48.0 | 3.48e-01 | 100.0% | 82.7% |
| 2f33A01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.57 | 47.0 | 4.43e-01 | 96.4% | 85.9% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.56 | 45.0 | 4.20e-01 | 96.4% | 87.2% |
| 3u3iA02 | 1.20.58.1110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 41.0 | 3.36e-01 | 80.4% | 45.4% |
| 3hdiA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.55 | 44.0 | 3.17e-01 | 94.6% | 70.2% |
| 3lynB00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.53 | 45.0 | 3.57e-01 | 100.0% | 63.7% |
| 2uytA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 42.0 | 2.92e-01 | 100.0% | 69.7% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5037840 | 610.3.1.1 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey | 0.74 | 63.0 | 4.45e-01 | 98.2% | 33.7% |
| 5028520 | 610.3.1.1 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey | 0.73 | 62.0 | 4.44e-01 | 100.0% | 34.3% |
| 4946990 | 610.3.1.1 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey | 0.72 | 61.0 | 4.39e-01 | 98.2% | 33.7% |
| 3876674 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 61.0 | 5.29e-01 | 96.4% | 61.1% |
| 4169204 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.71 | 55.0 | 5.62e-01 | 96.4% | 89.1% |
| 4996012 | 610.3.1.1 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey | 0.71 | 60.0 | 4.20e-01 | 98.2% | 31.1% |
| 3420171 | 108.1.1.1 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1 | 0.65 | 47.0 | 4.28e-01 | 76.8% | 60.0% |
| 3234424 | 108.1.1.96 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 | 0.60 | 44.0 | 3.92e-01 | 78.6% | 56.2% |
| 3705956 | 108.1.1.73 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 | 0.59 | 39.0 | 3.45e-01 | 71.4% | 50.5% |
| 5021927 | 101.1.1.550 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF1016_N | 0.58 | 47.0 | 3.84e-01 | 100.0% | 44.8% |
| 3190607 | 6169.1.1.59 ↗ | extended segments › Transmembrane segment of lysosome-associated membrane glycoprotein 2 › Transmembrane segment of lysosome-associated membrane glycoprotein 2 › Transmembrane segment of lysosome-associated membrane glycoprotein 2 › PLAC8 | 0.57 | 45.0 | 3.95e-01 | 85.7% | 83.5% |
| 4993602 | 632.23.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I | 0.56 | 38.0 | 3.77e-01 | 73.2% | 68.3% |
| 3643664 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.55 | 41.0 | 3.92e-01 | 92.9% | 73.3% |
| 4459611 | 108.1.1.98 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 | 0.54 | 40.0 | 3.36e-01 | 80.4% | 45.0% |