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NC_055841.1__YP_010107208.1__KNU99_gp066__00066

Bact-Vir

NC_055841.1__YP_010107208.1__KNU99_gp066__00066

Identity

Accession:
NC_055841 ↗
Kingdom:
phage

Quality

55.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pootjesviridae› Heverleevirus› Agrobacterium_phage_OLIVR5

TaxID: 2723773

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 66-154
PDB
D2 high residues 182-268
PDB
Domain cluster: rep: NC_048751.1__YP_009843702.1__HWC07_gp021__00021__D19-110
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24043.2 best DUF7352 55.6 7.20e-15 100.0% 87.8%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hkjD00 2.60.240.30 Mainly Beta › Sandwich › Viral Chemokine Inhibitor; Chain A › 0.58 39.0 3.10e-01 70.1% 90.9%
4f8lA00 2.60.40.3590 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 39.0 3.42e-01 70.1% 77.5%
4aeeA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 37.0 3.65e-01 70.1% 59.8%
1cwvA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 39.0 3.77e-01 72.4% 66.7%
2di8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 38.0 3.72e-01 70.1% 63.8%
5w0kA01 3.90.380.20 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II 0.53 40.0 2.81e-01 83.9% 71.1%
7z47G01 2.60.40.1080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 33.0 3.57e-01 70.1% 77.1%
2onlC01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 37.0 3.78e-01 97.7% 76.7%
4btfA03 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 39.0 3.59e-01 80.5% 87.5%
3f62A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.48e-01 77.0% 88.0%
1kqrA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 36.0 3.02e-01 94.3% 41.2%
2bc4A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 35.0 3.28e-01 71.3% 63.3%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3390769 206.1.1.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr,TGF_beta_GS 0.58 41.0 2.70e-01 73.6% 44.5%
3263951 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 41.0 4.14e-01 72.4% 74.1%
4103301 11.1.1.1248 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29240 0.57 39.0 3.94e-01 70.1% 70.0%
3350507 11.1.1.394 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF568 0.57 39.0 3.26e-01 72.4% 69.4%
5001959 11.1.1.75 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › He_PIG 0.56 38.0 3.73e-01 70.1% 74.7%
3554056 11.1.1.134 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL12p40_C 0.54 37.0 3.40e-01 71.3% 69.6%
2321024 11.1.1.207 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › AMPK1_CBM 0.54 35.0 3.28e-01 72.4% 51.3%
3799045 206.1.2.4 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › Ins_P5_2-kin 0.52 46.0 2.96e-01 100.0% 75.9%
3247639 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 42.0 2.97e-01 93.1% 74.1%
3263396 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 36.0 3.70e-01 73.6% 81.2%