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NC_055841.1__YP_010107228.1__KNU99_gp086__00086

Bact-Vir

Identity

Accession:: NC_055841 ↗
Kingdom:: phage

Quality

93.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pootjesviridae› Heverleevirus› Agrobacterium_phage_OLIVR5

TaxID: 2723773

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-92

PDB

Domain cluster: rep: OP917929.1__WAX22671.1__X__00131__D9-92

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
8gy0A01	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.66	41.0	2.89e-01	92.2%	19.6%
2o7gA00	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.65	43.0	4.35e-01	96.7%	68.2%
3apzA00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.65	42.0	2.89e-01	100.0%	19.7%
1xo0A01	1.10.150.130	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain	0.61	44.0	4.17e-01	76.7%	74.8%
2mabA00	1.10.10.1350	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain	0.58	32.0	3.02e-01	78.9%	43.1%
5fcxA00	1.10.2090.10	Mainly Alpha › Orthogonal Bundle › orange carotenoid protein, domain 2 › Orange carotenoid-binding protein, N-terminal domain	0.54	41.0	3.62e-01	82.2%	86.3%
1i36A02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.52	36.0	3.52e-01	71.1%	94.9%
3q23A04	6.10.140.1370	Special › Helix non-globular › Helix Hairpins ›	0.50	35.0	3.52e-01	88.9%	71.4%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3701004	4133.1.1.0 ↗	alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like	0.61	35.0	3.67e-01	85.6%	60.0%
3738702	592.2.1.2 ↗	alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG	0.59	42.0	3.79e-01	73.3%	88.8%
5059337	101.1.2.21 ↗	alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress	0.58	37.0	3.31e-01	77.8%	42.8%
4979544	101.45.1.0 ↗	alpha arrays › HTH › DNA polymerase II large subunit DP2 helical domain › DNA polymerase II large subunit DP2 helical domain	0.56	33.0	3.68e-01	83.3%	78.5%
3742994	524.1.1.1 ↗	alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC	0.53	46.0	4.05e-01	100.0%	66.2%
5002943	148.1.3.4 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › CbbQ_C	0.53	38.0	3.80e-01	100.0%	75.6%
3954714	191.1.1.10 ↗	alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_6	0.52	35.0	3.08e-01	95.6%	45.9%
3866856	11.1.1.2 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3	0.52	38.0	2.71e-01	76.7%	26.2%
4030651	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.51	39.0	2.96e-01	80.0%	46.7%
3265863	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.50	41.0	3.16e-01	91.1%	75.8%