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NC_055841.1__YP_010107301.1__KNU99_gp242__00159
Bact-VirNC_055841.1__YP_010107301.1__KNU99_gp242__00159
Identity
- Accession:
- NC_055841 ↗
- Kingdom:
- phage
Quality
86.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pootjesviridae›
Heverleevirus›
Agrobacterium_phage_OLIVR5
TaxID: 2723773
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-45
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ljyA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.83 | 69.0 | 4.36e-01 | 88.6% | 99.0% |
| 5vntA00 | 1.10.950.10 | Mainly Alpha › Orthogonal Bundle › Villin Headpiece Domain; Chain A › Villin headpiece domain | 0.77 | 52.0 | 4.58e-01 | 72.7% | 49.2% |
| 4jquB00 | 1.10.287.4310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.77 | 58.0 | 5.38e-01 | 86.4% | 64.8% |
| 2odaA00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.76 | 62.0 | 4.02e-01 | 90.9% | 78.1% |
| 4xukA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.59 | 47.0 | 2.88e-01 | 90.9% | 13.4% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3213917 | 3469.1.1.0 ↗ | extended segments › Ubiquitin-binding motif (UBM) › Ubiquitin-binding motif (UBM) › Ubiquitin-binding motif (UBM) | 0.86 | 68.0 | 7.25e-01 | 88.6% | 100.0% |
| 3570397 | 3469.1.1.0 ↗ | extended segments › Ubiquitin-binding motif (UBM) › Ubiquitin-binding motif (UBM) › Ubiquitin-binding motif (UBM) | 0.86 | 76.0 | 7.23e-01 | 95.5% | 84.0% |
| 3972594 | 3714.1.1.1 ↗ | a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › LonC_helical | 0.85 | 72.0 | 4.35e-01 | 93.2% | 21.2% |
| 3244374 | 3469.1.1.0 ↗ | extended segments › Ubiquitin-binding motif (UBM) › Ubiquitin-binding motif (UBM) › Ubiquitin-binding motif (UBM) | 0.83 | 60.0 | 6.26e-01 | 84.1% | 87.5% |
| 3868542 | 4310.1.1.2 ↗ | alpha arrays › Dcp2 box A domain › Dcp2 box A domain › Dcp2 box A domain › 3HBD | 0.82 | 72.0 | 5.46e-01 | 97.7% | 48.0% |
| 4944880 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.81 | 59.0 | 4.28e-01 | 79.5% | 50.0% |
| 4671538 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.79 | 64.0 | 3.90e-01 | 88.6% | 86.2% |
| 3692460 | 4095.1.1.1 ↗ | alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N | 0.70 | 59.0 | 4.12e-01 | 100.0% | 45.3% |
| 4795897 | 221.1.1.203 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RelA_AH_RIS | 0.59 | 44.0 | 3.50e-01 | 86.4% | 37.0% |