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NC_055841.1__YP_010107308.1__KNU99_gp235__00166

Bact-Vir

NC_055841.1__YP_010107308.1__KNU99_gp235__00166

Identity

Accession:
NC_055841 ↗
Kingdom:
phage

Quality

79.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 32-85
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4nsmA00 6.10.250.2770 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.72 63.0 5.81e-01 100.0% 78.9%
1lvlA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.67 47.0 3.13e-01 74.1% 24.0%
3o39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.67 55.0 4.72e-01 100.0% 61.5%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4931937 3755.4.1.66 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › MCPsignal 0.78 69.0 4.22e-01 100.0% 18.8%
3834805 109.3.1.397 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › NPR1_like_C, Ank_2 0.78 71.0 4.43e-01 100.0% 21.4%
3282780 2003.1.1.69 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 0.78 68.0 4.46e-01 100.0% 45.5%
3958616 2003.1.1.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.71 61.0 4.12e-01 98.1% 62.0%
3684790 2003.1.1.69 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 0.63 51.0 3.36e-01 98.1% 50.0%
3206932 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.61 54.0 3.28e-01 100.0% 20.6%
3698588 4.27.1.0 beta barrels › SH3 › Mitoribosomal protein mS34 › Mitoribosomal protein mS34 0.58 47.0 3.42e-01 90.7% 44.9%