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NC_055841.1__YP_010107356.1__KNU99_gp187__00214

Bact-Vir

NC_055841.1__YP_010107356.1__KNU99_gp187__00214

Identity

Accession:
NC_055841 ↗
Kingdom:
phage

Quality

80.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pootjesviridae› Heverleevirus› Agrobacterium_phage_OLIVR5

TaxID: 2723773

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 143-286
PDB
Domain cluster: rep: OR420741.1__WOZ55670.1__CRP118_gp39__00039__D1-140
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05257.23 best CHAP 45.2 1.50e-11 56.9% 96.3%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fdyA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.78 63.0 6.55e-01 96.5% 90.3%
4cshA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.73 68.0 6.50e-01 99.3% 97.0%
2evrA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.72 62.0 6.22e-01 96.5% 87.8%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.70 62.0 5.69e-01 94.4% 94.6%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.69 63.0 5.45e-01 97.2% 79.9%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.69 62.0 5.32e-01 94.4% 70.4%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.68 28.0 4.27e-01 93.8% 93.2%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 48.0 5.02e-01 81.2% 100.0%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 26.0 3.75e-01 91.0% 100.0%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 46.0 4.73e-01 93.8% 93.6%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 35.0 4.15e-01 87.5% 100.0%
1b12C01 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.53 39.0 4.19e-01 75.7% 93.4%
2rhiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 31.0 3.44e-01 72.9% 78.6%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964422 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.90 86.0 8.29e-01 99.3% 97.5%
4476649 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.78 64.0 6.66e-01 95.8% 91.1%
3279614 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.75 68.0 6.61e-01 94.4% 87.7%
3615154 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.71 62.0 5.69e-01 93.1% 94.6%
4030940 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.70 66.0 6.41e-01 99.3% 94.2%
1905738 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.70 64.0 6.38e-01 97.2% 97.3%
3702189 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.70 62.0 5.38e-01 93.8% 92.4%
1228348 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.70 63.0 5.64e-01 97.2% 85.9%
3596620 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.70 63.0 5.63e-01 96.5% 93.8%
3606829 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.69 63.0 5.51e-01 96.5% 81.5%
3598532 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.69 62.0 5.47e-01 96.5% 90.7%
3591737 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.69 62.0 5.74e-01 96.5% 93.3%
5018860 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.68 61.0 6.07e-01 95.8% 92.7%
5006274 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.64 38.0 3.92e-01 75.0% 60.0%
3393319 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 37.0 4.19e-01 87.5% 75.5%
3782999 219.1.1.115 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AIM3_BBC1_C 0.63 58.0 5.83e-01 97.2% 97.2%
3881119 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 34.0 4.23e-01 76.4% 92.5%
3576438 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 36.0 4.28e-01 88.9% 92.2%
3845425 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 34.0 4.16e-01 82.6% 88.9%
4958339 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.60 39.0 4.42e-01 79.2% 87.3%
3999725 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 32.0 3.92e-01 76.4% 90.6%
3736175 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 30.0 3.75e-01 86.8% 88.2%
3693649 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.54 41.0 3.80e-01 79.9% 80.0%
3727542 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 30.0 3.70e-01 84.0% 93.3%
3737837 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 21.0 2.94e-01 90.3% 80.0%
D2 medium residues 9-104
PDB
Domain cluster: rep: ALT_07252016_14_scaffold_0_prodigal-single.1__X__X__00132__D29-77_93-127
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06714.18 best Gp5_OB 56.8 4.20e-15 69.8% 41.0%