←Back to structures

NC_055841.1__YP_010107392.1__KNU99_gp151__00250

Bact-Vir

NC_055841.1__YP_010107392.1__KNU99_gp151__00250

Identity

Accession:
NC_055841 ↗
Kingdom:
phage

Quality

93.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pootjesviridae› Heverleevirus› Agrobacterium_phage_OLIVR5

TaxID: 2723773

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-68
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tgnB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 56.0 5.68e-01 83.1% 98.4%
1t6sB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 56.0 5.31e-01 86.2% 83.1%
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.70 48.0 4.94e-01 70.8% 96.7%
3bpvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 55.0 4.31e-01 86.2% 48.2%
3lsgA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 42.0 4.57e-01 76.9% 100.0%
1t3qA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.53 40.0 3.83e-01 84.6% 70.4%
2yx8A00 1.10.150.510 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family 0.51 42.0 4.02e-01 96.9% 95.1%
2xgcA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 40.0 3.27e-01 87.7% 56.2%
8h6rA01 1.20.930.10 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.51 37.0 3.43e-01 78.5% 87.1%
4usaA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.50 40.0 3.44e-01 98.5% 51.3%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3970023 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 55.0 5.23e-01 86.2% 76.2%
5076531 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 55.0 5.55e-01 86.2% 93.8%
4958983 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.70 38.0 4.50e-01 89.2% 77.8%
4940794 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.67 37.0 4.15e-01 89.2% 70.0%
5001098 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 52.0 4.69e-01 86.2% 80.0%
5042937 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.66 40.0 4.30e-01 92.3% 72.7%
3881136 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.65 38.0 4.29e-01 87.7% 76.0%
4009601 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.64 48.0 4.71e-01 86.2% 75.7%
3547416 376.1.3.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_CARP1-2 0.64 40.0 4.36e-01 92.3% 76.4%
3387591 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.64 47.0 4.72e-01 81.5% 80.0%
3283554 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.64 45.0 4.93e-01 84.6% 100.0%
4061170 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.63 45.0 4.73e-01 78.5% 89.1%
4064919 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.63 48.0 4.91e-01 87.7% 87.3%
3969859 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.63 46.0 4.80e-01 87.7% 86.7%
3947206 101.1.1.2 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.63 45.0 4.86e-01 80.0% 100.0%
3982083 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.63 45.0 4.85e-01 84.6% 100.0%
4156023 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.62 43.0 4.73e-01 76.9% 100.0%
3976640 101.1.1.2 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.62 46.0 4.69e-01 86.2% 81.5%
3984272 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.62 44.0 4.77e-01 84.6% 100.0%
3283005 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.62 45.0 4.78e-01 86.2% 94.5%
5022765 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 46.0 4.56e-01 84.6% 77.1%
3514805 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.61 45.0 4.72e-01 86.2% 94.5%
3983051 101.1.1.2 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.61 45.0 4.72e-01 86.2% 94.5%
3927094 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.60 41.0 4.00e-01 92.3% 64.3%
2670619 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.60 43.0 4.40e-01 84.6% 79.7%
4134806 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.60 45.0 4.57e-01 87.7% 83.1%
3703451 101.1.15.0 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.60 46.0 4.19e-01 84.6% 67.8%
3972910 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.60 43.0 4.38e-01 80.0% 78.5%
3947191 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.59 43.0 4.51e-01 80.0% 92.7%
3510591 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.59 45.0 4.80e-01 86.2% 100.0%
3944775 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.59 45.0 4.63e-01 87.7% 90.0%
3971441 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 47.0 4.75e-01 89.2% 90.5%
3979666 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.59 45.0 4.66e-01 87.7% 93.3%
3971593 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.58 45.0 4.69e-01 87.7% 93.3%
4114758 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.58 44.0 4.52e-01 87.7% 85.9%
4946657 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.58 44.0 4.46e-01 100.0% 81.5%
3973662 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.58 49.0 4.36e-01 98.5% 96.0%
5001950 266.1.1.1 ↗ a+b two layers › Thymidylate synthase/dCMP hydroxymethylase › Thymidylate synthase/dCMP hydroxymethylase › Thymidylate synthase/dCMP hydroxymethylase › Thymidylat_synt 0.58 43.0 2.88e-01 80.0% 93.2%
3794745 7579.1.1.44 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 0.56 41.0 2.76e-01 84.6% 17.4%
3480673 375.4.1.0 ↗ few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like 0.51 34.0 3.74e-01 86.2% 90.0%
3305206 109.4.1.1260 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long 0.51 42.0 2.89e-01 95.4% 40.0%