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NC_055842.1__YP_010107466.1__KNV00_gp204__00065
Bact-VirNC_055842.1__YP_010107466.1__KNV00_gp204__00065
Identity
- Accession:
- NC_055842 ↗
- Kingdom:
- phage
Quality
91.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Stanwilliamsviridae›
Samistivirus›
Streptomyces_phage_Bmoc
TaxID: 2725629
Cluster
View cluster (10 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 40-98
Domain cluster:
rep: OR553909.1__WNN95719.1__SEA_GLASKE16_86__00086__D69-136
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13392.13 best | HNH_3 | 27.1 | 3.40e-06 | 72.9% | 93.5% |
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1fxkC00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.79 | 53.0 | 3.99e-01 | 79.7% | 30.8% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.77 | 49.0 | 3.97e-01 | 76.3% | 35.8% |
| 2qgpA00 | 1.10.30.50 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › | 0.69 | 54.0 | 4.84e-01 | 86.4% | 80.7% |
| 3m7kA00 | 3.30.40.220 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.67 | 50.0 | 3.79e-01 | 81.4% | 64.1% |
| 4khbC00 | 2.30.29.210 | Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p | 0.66 | 46.0 | 3.75e-01 | 72.9% | 49.1% |
| 3fkdA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.64 | 47.0 | 3.81e-01 | 78.0% | 83.9% |
| 2nmlA00 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.64 | 46.0 | 3.83e-01 | 74.6% | 45.0% |
| 5eltA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.57 | 40.0 | 3.00e-01 | 72.9% | 76.9% |
| 4mt1A06 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.54 | 39.0 | 3.25e-01 | 74.6% | 90.1% |
| 3n5oA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 43.0 | 3.79e-01 | 89.8% | 97.8% |
| 6ko5A02 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.53 | 48.0 | 2.99e-01 | 98.3% | 32.9% |
| 2h84A02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.52 | 35.0 | 2.67e-01 | 94.9% | 27.0% |
| 3anwB00 | 1.20.58.2050 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 46.0 | 3.39e-01 | 100.0% | 93.8% |
| 2fd4A00 | 3.30.40.110 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › AvrPtoB, C-terminal domain | 0.52 | 39.0 | 3.41e-01 | 88.1% | 71.4% |
| 2oarB00 | 1.10.1200.120 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 | 0.51 | 39.0 | 3.01e-01 | 81.4% | 41.6% |
| 3hh0A01 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.51 | 35.0 | 3.30e-01 | 71.2% | 83.3% |
| 3qxyA01 | 3.90.1410.10 | Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 1 › set domain protein methyltransferase, domain 1 | 0.51 | 36.0 | 2.45e-01 | 78.0% | 64.0% |
| 2rrnA01 | 3.30.70.2040 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 36.0 | 3.26e-01 | 76.3% | 88.0% |
| 2kloA00 | 1.10.10.1420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA replication factor Cdt1, C-terminal WH domain | 0.51 | 31.0 | 2.48e-01 | 88.1% | 25.4% |
| 2rdpA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 45.0 | 3.41e-01 | 100.0% | 55.7% |
| 2fwrA01 | 3.40.1170.30 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › | 0.50 | 37.0 | 3.78e-01 | 89.8% | 82.5% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3266965 | 378.1.2.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › Inactive Tox-GHH domain of teneurin › HNH_3 | 0.89 | 62.0 | 6.04e-01 | 72.9% | 67.7% |
| 3515407 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.83 | 55.0 | 3.84e-01 | 78.0% | 23.8% |
| 4938398 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.80 | 54.0 | 3.93e-01 | 79.7% | 28.3% |
| 3489023 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.68 | 55.0 | 4.36e-01 | 88.1% | 70.0% |
| 3691694 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.64 | 46.0 | 3.58e-01 | 76.3% | 36.0% |
| 4979945 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.64 | 47.0 | 3.76e-01 | 81.4% | 74.4% |
| 4011958 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.61 | 42.0 | 2.63e-01 | 71.2% | 83.7% |
| 5048466 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 55.0 | 4.09e-01 | 100.0% | 64.3% |
| 3595211 | 3501.1.1.0 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 | 0.59 | 48.0 | 4.20e-01 | 86.4% | 97.6% |
| 4948253 | 2006.1.3.30 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Topoisom_bac | 0.59 | 45.0 | 2.69e-01 | 83.1% | 57.2% |
| 3284357 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.58 | 48.0 | 3.75e-01 | 100.0% | 42.3% |
| 4378662 | 3804.1.1.0 ↗ | alpha bundles › CRISPR-Cas system RNase C2c2 N-terminal domain › CRISPR-Cas system RNase C2c2 N-terminal domain › CRISPR-Cas system RNase C2c2 N-terminal domain | 0.55 | 50.0 | 3.54e-01 | 100.0% | 55.9% |
| 3599358 | 2.9.1.0 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like | 0.55 | 49.0 | 2.96e-01 | 100.0% | 38.5% |
| 3714160 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.53 | 49.0 | 4.21e-01 | 100.0% | 90.0% |
| 3997409 | 7524.1.1.1 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh | 0.52 | 48.0 | 3.15e-01 | 100.0% | 44.8% |
| 4113500 | 1056.1.1.1 ↗ | a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD | 0.52 | 47.0 | 3.15e-01 | 100.0% | 38.6% |
| 3422649 | 221.1.1.166 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF26130 | 0.52 | 40.0 | 3.40e-01 | 89.8% | 77.3% |
| 3637481 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.51 | 40.0 | 2.71e-01 | 86.4% | 35.5% |
| 4106254 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.50 | 38.0 | 2.98e-01 | 91.5% | 38.4% |