NC_055845.1__YP_010107810.1__KNV03_gp41__00041

Bact-Vir

Identity

90.9 mean pLDDT

Heunggongvirae› Uroviricota› Caudoviricetes› Peduoviridae› Peduovirus› Yersinia_phage_vB_YpM_46

TaxID: 2736200

View cluster (3 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 176-310

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2fu2A00	1.20.1440.50	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like	0.60	30.0	3.79e-01	82.2%	80.8%
3kezA03	1.25.40.900	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.56	30.0	3.21e-01	100.0%	58.1%
3t6gB00	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.55	42.0	4.21e-01	88.1%	80.6%
2hkvA01	1.20.120.450	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain	0.53	43.0	4.23e-01	84.4%	96.5%
6fhoA01	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.50	35.0	3.05e-01	92.6%	46.3%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3895085	604.1.1.168 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › FEZ	0.56	42.0	4.16e-01	92.6%	72.9%
3933602	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.51	41.0	3.01e-01	84.4%	89.6%

D2 medium residues 12-59_72-96

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2p4bB02	3.30.200.100	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › MucB/RseB, C-terminal domain	0.64	37.0	3.38e-01	94.5%	42.9%
4qjvB00	3.30.1360.10	Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit	0.53	39.0	3.62e-01	100.0%	60.6%
2onlC01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.50	35.0	3.37e-01	98.6%	62.8%
1nrkA01	3.30.70.1630	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.50	36.0	3.32e-01	100.0%	57.7%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1832709	10.2.1.41 ↗	beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_NCLDV	0.65	33.0	3.56e-01	84.9%	56.7%
4563127	310.3.1.3 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilN	0.53	36.0	3.27e-01	95.9%	49.5%
4252405	305.1.1.2 ↗	a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2	0.53	38.0	3.62e-01	100.0%	63.3%
1815425	319.3.1.1 ↗	beta sandwiches › HSP20-like › B2 domain of PilQ › B2 domain of PilQ › AMIN	0.53	37.0	3.38e-01	100.0%	55.0%
5027083	305.1.1.2 ↗	a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2	0.52	38.0	3.57e-01	100.0%	63.3%
3177297	304.9.1.1 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1	0.52	38.0	3.45e-01	100.0%	57.0%
5000520	305.1.1.1 ↗	a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L	0.50	36.0	3.22e-01	100.0%	53.3%

D3 medium residues 97-175

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1s8nA02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.64	42.0	4.75e-01	100.0%	91.4%
2nsfA01	1.20.120.450	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain	0.59	44.0	3.60e-01	100.0%	40.3%
1ii2A03	3.90.228.20	Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 ›	0.55	45.0	3.17e-01	100.0%	27.7%
5t8uB01	3.30.930.10	Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2	0.52	39.0	2.74e-01	79.7%	75.4%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3279608	2484.1.1.0 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like	0.54	47.0	3.78e-01	100.0%	93.9%
3447438	376.1.1.0 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box	0.52	37.0	3.34e-01	73.4%	59.1%
3611905	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.52	37.0	3.01e-01	74.7%	42.0%
3603340	2005.1.1.11 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3	0.50	45.0	3.17e-01	100.0%	95.6%