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NC_055847.1__YP_010108005.1__KNV05_gp136__00157

Bact-Vir

NC_055847.1__YP_010108005.1__KNV05_gp136__00157

Identity

Accession:
NC_055847 ↗
Kingdom:
phage

Quality

74.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Thalassavirus› Vibrio_phage_River4

TaxID: 2736288

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-62
PDB
Domain cluster: rep: CP025712.1__AUO37541.1__YDC107_5424__00064__D737-787
CATH (74)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.80 69.0 4.85e-01 100.0% 31.7%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.79 67.0 5.65e-01 100.0% 57.6%
2mq8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.74 62.0 5.10e-01 100.0% 88.4%
3bn7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.73 64.0 5.29e-01 100.0% 98.0%
6l4cA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.73 49.0 3.40e-01 98.2% 21.2%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.73 61.0 5.19e-01 100.0% 57.4%
2eddA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.71 51.0 4.16e-01 100.0% 39.3%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.71 60.0 4.96e-01 100.0% 58.7%
2n59A00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.70 60.0 4.92e-01 100.0% 52.5%
2v5yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 55.0 4.57e-01 100.0% 48.0%
1r6yA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 60.0 5.01e-01 100.0% 99.0%
7y8sB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 53.0 4.61e-01 100.0% 52.9%
5b08A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 61.0 5.06e-01 100.0% 98.0%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.70 60.0 5.10e-01 100.0% 61.5%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.70 62.0 5.10e-01 100.0% 70.0%
3bguA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 60.0 5.10e-01 100.0% 100.0%
6b9tF02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.69 46.0 3.77e-01 98.2% 35.8%
5xzqF00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 60.0 4.96e-01 100.0% 97.1%
1n26A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 56.0 4.55e-01 100.0% 47.7%
4o9gA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.69 48.0 3.60e-01 100.0% 29.7%
4za1C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 60.0 5.13e-01 100.0% 93.5%
2ipiA02 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.68 59.0 3.86e-01 100.0% 39.9%
2xskA00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.68 61.0 5.10e-01 100.0% 60.0%
1yqsA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.68 47.0 2.90e-01 73.2% 93.9%
2mraA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.67 56.0 4.56e-01 100.0% 52.1%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.66 56.0 4.61e-01 100.0% 51.4%
2o3iA01 3.40.1610.10 Alpha Beta › 3-Layer(aba) Sandwich › CV3147-like fold › CV3147-like domain 0.66 53.0 3.59e-01 94.6% 24.2%
1r0uA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 58.0 4.30e-01 100.0% 91.5%
4lejA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 46.0 3.25e-01 100.0% 23.6%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.65 55.0 4.69e-01 100.0% 61.2%
4qd4A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.65 45.0 2.76e-01 80.4% 11.5%
1txoB00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.65 53.0 3.64e-01 100.0% 31.8%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.64 52.0 4.99e-01 100.0% 78.8%
3d0jA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 43.0 3.31e-01 100.0% 29.0%
3q8pB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.64 48.0 3.94e-01 82.1% 83.3%
1cauA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 45.0 3.21e-01 100.0% 23.8%
6jebA01 3.30.379.10 Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like 0.63 43.0 3.91e-01 71.4% 72.0%
6kbyA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.63 44.0 2.73e-01 80.4% 11.9%
3qjlA02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 43.0 3.40e-01 73.2% 52.1%
6usmB01 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.61 50.0 3.75e-01 92.9% 85.0%
1tr0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 52.0 4.30e-01 100.0% 97.2%
1mzkA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.61 53.0 4.16e-01 100.0% 96.7%
2pjyC00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.61 50.0 4.49e-01 100.0% 65.8%
1l3lA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.61 46.0 3.26e-01 82.1% 94.1%
3lqmA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 43.0 3.68e-01 100.0% 44.1%
4h3wA02 2.60.120.1260 Mainly Beta › Sandwich › Jelly Rolls › 0.60 53.0 3.87e-01 100.0% 38.8%
2q0oA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.59 45.0 3.26e-01 83.9% 97.6%
2cfmA02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.58 48.0 3.42e-01 100.0% 81.1%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.58 44.0 3.13e-01 80.4% 82.9%
5l10B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.57 44.0 3.14e-01 82.1% 95.9%
2bbhA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.57 51.0 3.73e-01 100.0% 76.2%
2irmA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.57 49.0 3.03e-01 100.0% 87.3%
4a18X01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 48.0 4.36e-01 100.0% 92.4%
3u5wA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 46.0 3.63e-01 100.0% 42.1%
2z5bA00 3.30.230.100 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.56 47.0 3.68e-01 96.4% 66.9%
1w99A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 47.0 3.34e-01 100.0% 38.7%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 44.0 4.18e-01 100.0% 73.7%
3ddcB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 45.0 3.58e-01 100.0% 63.9%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 46.0 3.23e-01 100.0% 28.6%
2rftA02 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.55 46.0 3.03e-01 94.6% 24.3%
4n0rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 46.0 4.10e-01 100.0% 91.8%
3pvlA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 45.0 3.90e-01 100.0% 70.8%
4ybnB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 44.0 3.08e-01 100.0% 26.3%
2bnmA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 45.0 3.62e-01 100.0% 48.3%
2i44B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.53 44.0 2.84e-01 100.0% 94.0%
3s7iB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 43.0 3.17e-01 100.0% 65.9%
7bjkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.53 35.0 2.97e-01 100.0% 35.4%
4ca1B02 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.52 42.0 3.41e-01 100.0% 48.5%
1xdnA02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.51 43.0 3.19e-01 94.6% 56.1%
1gpcA00 3.90.198.10 Alpha Beta › Alpha-Beta Complex › Replication Fork Single-Stranded DNA Binding Protein › Replication Fork Single-Stranded Dna Binding Protein 0.51 41.0 2.93e-01 100.0% 26.6%
6vgwA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.51 42.0 3.27e-01 100.0% 92.2%
5cadA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 42.0 3.04e-01 100.0% 32.1%
2kgfA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.50 39.0 3.00e-01 87.5% 56.4%
1xreA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.50 43.0 3.45e-01 98.2% 50.0%
ECOD (88)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4175430 1119.1.1.1 ↗ a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.79 70.0 4.56e-01 100.0% 23.5%
5011561 321.1.1.1 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Gln-synt_C 0.79 71.0 4.34e-01 100.0% 36.9%
4945424 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.79 52.0 3.89e-01 75.0% 29.2%
4179371 1119.1.1.1 ↗ a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.76 67.0 4.38e-01 100.0% 22.9%
2529479 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.76 67.0 4.44e-01 100.0% 99.5%
4033537 1119.1.1.1 ↗ a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.76 67.0 4.40e-01 100.0% 24.3%
4057352 1119.1.1.1 ↗ a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.76 66.0 4.29e-01 100.0% 22.0%
3705532 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.73 64.0 4.91e-01 100.0% 46.9%
166595 304.4.1.14 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb 0.73 64.0 5.31e-01 100.0% 99.0%
3699048 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.73 63.0 5.05e-01 100.0% 53.0%
3593981 302.1.1.0 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.71 61.0 5.08e-01 100.0% 57.1%
3242062 3680.1.1.1 ↗ a+b complex topology › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › SARA_C 0.71 51.0 3.75e-01 76.8% 40.7%
3743280 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.71 62.0 4.93e-01 100.0% 51.3%
4970098 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.71 61.0 4.94e-01 100.0% 54.5%
4948356 303.1.1.1 ↗ a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC 0.70 61.0 4.52e-01 100.0% 41.3%
5034119 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.70 52.0 3.50e-01 78.6% 54.5%
4953396 303.1.1.1 ↗ a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC 0.70 61.0 4.57e-01 100.0% 45.5%
4076721 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.70 61.0 4.93e-01 100.0% 54.5%
4946583 302.1.1.0 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.70 59.0 4.78e-01 100.0% 53.9%
4418109 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.69 60.0 4.51e-01 100.0% 42.0%
5010744 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.69 56.0 5.39e-01 89.3% 100.0%
4659266 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.69 59.0 4.82e-01 100.0% 54.5%
4147528 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.69 60.0 5.63e-01 98.2% 100.0%
5049412 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.67 57.0 4.51e-01 100.0% 48.0%
3969006 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.67 49.0 5.27e-01 96.4% 100.0%
3483062 221.1.1.116 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_6 0.66 54.0 4.28e-01 100.0% 43.3%
3609926 302.1.1.0 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.66 55.0 4.37e-01 100.0% 52.3%
4004704 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.66 48.0 5.13e-01 96.4% 100.0%
3968122 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.65 47.0 5.11e-01 94.6% 97.8%
3963369 4222.1.1.2 ↗ a+b two layers › ImmE5-like › ImmE5-like › ImmE5-like › Imm40 0.65 55.0 4.71e-01 98.2% 60.0%
3994984 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.65 57.0 5.48e-01 100.0% 90.8%
5081134 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.64 50.0 4.97e-01 96.4% 83.3%
3411558 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.64 53.0 4.14e-01 100.0% 47.9%
5012895 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.63 51.0 5.20e-01 100.0% 96.4%
4951473 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.63 53.0 5.18e-01 98.2% 85.7%
3216210 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.63 49.0 5.07e-01 98.2% 100.0%
3396683 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.63 54.0 4.80e-01 96.4% 94.9%
5077058 304.51.1.1 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C 0.62 45.0 3.52e-01 76.8% 53.6%
3905094 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.62 50.0 3.97e-01 100.0% 50.4%
3928420 3680.1.1.0 ↗ a+b complex topology › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain 0.61 45.0 3.32e-01 78.6% 41.3%
5065436 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.61 51.0 4.97e-01 100.0% 87.5%
5080205 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.61 47.0 4.92e-01 100.0% 100.0%
4969863 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.61 50.0 4.67e-01 100.0% 73.3%
5014684 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.61 49.0 4.94e-01 100.0% 91.4%
3551746 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.61 50.0 4.45e-01 100.0% 91.1%
3480216 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 52.0 3.98e-01 100.0% 55.6%
5067865 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.60 50.0 4.79e-01 100.0% 80.0%
4995671 3115.1.1.12 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 0.60 45.0 4.62e-01 100.0% 94.0%
4943640 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 44.0 3.41e-01 80.4% 45.1%
3225460 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.59 51.0 4.21e-01 100.0% 54.7%
3830169 109.4.1.1383 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, Eplus_motif, E_motif 0.59 48.0 2.72e-01 96.4% 12.5%
3343923 109.4.1.1156 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › E_motif 0.59 48.0 3.05e-01 92.9% 29.3%
4927303 525.1.1.1 ↗ a+b two layers › Urease, gamma-subunit › Urease, gamma-subunit › Urease, gamma-subunit › Urease_gamma 0.59 50.0 4.00e-01 100.0% 89.2%
3671718 109.4.1.2659 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, DYW_deaminase, E_motif, TPR_24 0.59 48.0 2.74e-01 96.4% 13.8%
3684103 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.59 48.0 2.81e-01 96.4% 16.1%
4029586 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.59 51.0 3.81e-01 100.0% 52.0%
3968768 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.59 48.0 4.50e-01 98.2% 100.0%
3446121 109.4.1.3478 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, Eplus_motif, E_motif, TPR_24 0.59 48.0 2.76e-01 96.4% 14.7%
3663499 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.59 47.0 2.74e-01 96.4% 14.3%
4939739 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.59 47.0 4.71e-01 100.0% 93.2%
3311892 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.58 48.0 2.93e-01 96.4% 23.3%
3802249 109.4.1.1291 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.58 48.0 2.81e-01 96.4% 17.4%
5045852 302.4.1.1 ↗ a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.58 42.0 3.55e-01 82.1% 90.0%
3516524 3680.1.1.1 ↗ a+b complex topology › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › SARA_C 0.58 49.0 3.69e-01 96.4% 75.9%
3370602 109.4.1.1520 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, E_motif 0.58 47.0 3.03e-01 96.4% 30.8%
3330581 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.58 47.0 2.62e-01 96.4% 10.2%
3817532 109.4.1.2179 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3, DYW_deaminase, E_motif 0.58 47.0 2.75e-01 96.4% 15.5%
3330921 109.4.1.1285 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.58 47.0 2.90e-01 96.4% 23.5%
4946800 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 41.0 3.13e-01 80.4% 40.0%
3645497 7508.1.1.1 ↗ a/b three-layered sandwiches › O-glucosyltransferase rumi N-terminal domain › O-glucosyltransferase rumi N-terminal domain › O-glucosyltransferase rumi N-terminal domain › Glyco_transf_90 0.57 42.0 3.19e-01 78.6% 65.2%
3424994 109.4.1.1291 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.57 48.0 2.73e-01 98.2% 14.0%
3227513 3115.1.1.3 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › NRF 0.57 47.0 4.01e-01 100.0% 55.2%
3657071 109.4.1.2208 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif, TPR_24 0.57 47.0 2.87e-01 96.4% 23.2%
3378740 109.4.1.1291 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.57 47.0 2.62e-01 96.4% 10.2%
3385387 109.4.1.1521 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, Eplus_motif, E_motif 0.57 46.0 2.73e-01 96.4% 16.7%
3628791 3680.1.1.1 ↗ a+b complex topology › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › Zinc finger FYVE domain-containing protein 9 C-terminal domain › SARA_C 0.57 45.0 3.38e-01 91.1% 74.2%
3825377 109.4.1.1291 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.57 46.0 2.66e-01 96.4% 14.0%
3339265 109.4.1.1291 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.57 47.0 2.69e-01 96.4% 18.8%
5058928 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 45.0 2.81e-01 100.0% 15.1%
4007508 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.56 42.0 4.35e-01 100.0% 98.0%
3648991 2492.1.1.39 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › DYW_deaminase 0.56 44.0 3.53e-01 92.9% 66.9%
3348902 109.4.1.1291 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.56 45.0 2.66e-01 96.4% 21.8%
3818971 109.4.1.1291 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.53 43.0 2.54e-01 98.2% 14.3%
3929515 382.1.1.21 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › PF28966 0.53 48.0 3.89e-01 100.0% 61.9%
3488019 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.53 44.0 3.36e-01 96.4% 50.7%
3222162 302.4.1.1 ↗ a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.53 44.0 3.67e-01 100.0% 52.7%
3996026 7508.1.1.1 ↗ a/b three-layered sandwiches › O-glucosyltransferase rumi N-terminal domain › O-glucosyltransferase rumi N-terminal domain › O-glucosyltransferase rumi N-terminal domain › Glyco_transf_90 0.53 41.0 3.11e-01 85.7% 72.1%
3831039 109.4.1.1599 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase 0.52 43.0 2.46e-01 96.4% 47.5%